PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.Y9WEE
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 25789.7 Da    PI: 8.0965
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.Y9WEEgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF831.9e-262978150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ ++ifss+gklye +
  Araip.Y9WEE 29 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSSHGKLYELA 78
                 79*********************************************965 PP
2K-box61.53.3e-211131951698
        K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                    ++e++ Lk+ei++Lq+ +  l G + +++++ +Lq Le++Le+ + +iRs K++l+l++i++l+ ke  l+ +nk L+ k+
  Araip.Y9WEE 113 DAKEEADVLKQEIDTLQKGISYLFGGGTGTMTIDDLQILEKNLETWIYQIRSMKMNLMLQEIQDLRDKEGTLKAANKFLHDKI 195
                  5689****************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554558.5E-292194IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.3612181IPR002100Transcription factor, MADS-box
SMARTSM004329.5E-362180IPR002100Transcription factor, MADS-box
CDDcd002657.40E-422299No hitNo description
PROSITE patternPS0035002377IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-282343IPR002100Transcription factor, MADS-box
PfamPF003191.0E-233076IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-284358IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-285879IPR002100Transcription factor, MADS-box
PfamPF014866.7E-22108195IPR002487Transcription factor, K-box
PROSITE profilePS5129711.474111201IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
ATSKLVQTSG RLCAEKAHTS MARGRIQLKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD  60
AEIGLVIFSS HGKLYELATK GTMQGVIERY MKFTTGAAQP EEPPTEPHHH PLDAKEEADV  120
LKQEIDTLQK GISYLFGGGT GTMTIDDLQI LEKNLETWIY QIRSMKMNLM LQEIQDLRDK  180
EGTLKAANKF LHDKILENTT AFTNFAPFAT DSTYPLTIQD GIFPALGNVL G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-1721105180MEF2 CHIMERA
6byy_B2e-1721105180MEF2 CHIMERA
6byy_C2e-1721105180MEF2 CHIMERA
6byy_D2e-1721105180MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.Y9WEE
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016188090.11e-157agamous-like MADS-box protein AGL12 isoform X1
RefseqXP_025643067.11e-157agamous-like MADS-box protein AGL12
SwissprotQ388414e-81AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A445A6K21e-156A0A445A6K2_ARAHY; Uncharacterized protein
STRINGXP_004514527.11e-115(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75663144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.11e-77AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]