PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.Y6XJM
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 404aa    MW: 47338.9 Da    PI: 9.1273
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.Y6XJMgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.61.3e-1550136191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY+ Y+k +GFs++++++++    ++i+++  vC++eg+ +++ +    + + +++   +C a++ v+ +k  g w ++k++l+H+H+++p
  Araip.Y6XJM  50 KFYKYYSKLAGFSTKIRNTTRD--GDKIKNQLIVCTREGRWKSKISP---TLKINPSAGLNCPARIYVHIMKdVGLWTISKVVLNHSHPCCP 136
                  6****************98776..8889************9998777...89999****************999***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.3E-1350136IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.926281317IPR007527Zinc finger, SWIM-type
SMARTSM005750.0034292319IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MNDSTSNQLN DNDLVYSSET NDADETRCVV DEKFVPKVGM IFKTLEETRK FYKYYSKLAG  60
FSTKIRNTTR DGDKIKNQLI VCTREGRWKS KISPTLKINP SAGLNCPARI YVHIMKDVGL  120
WTISKVVLNH SHPCCPDRAE MLKQHRELSM FVRLYKDRHI WIPLYLNHHF CAGMRSTQRS  180
ESMHSFFNKF ITCNTSLRQF VKQYDNCLAS REQREREFDA ADFYTVIPCA TKSAIEAQFQ  240
HGSSSTIQRK SEQHHKINAS TLGFRTYEVV EQVSNSTFNK FLVTYDAVSR EVKCQCLLFE  300
SRGILCRHSL NILSFERVDN VAPRYILERW SKNIKRRHTH IKSSQDEPLL EPRSKRLDDF  360
VFRSHNICEF ASQFEELTRI LHWAFDKTVD QPFSQIPAFT MHQI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.Y6XJM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2377607e-57AY237760.1 Arachis hypogaea clone PM106 microsatellite sequence.
GenBankAY7315987e-57AY731598.1 Arachis hypogaea clone PM449 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015960283.11e-148protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A444ZLV20.0A0A444ZLV2_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.27e-29far-red elongated hypocotyls 3