PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.Y6QYT

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

TCP

Protein Properties

Length: 283aa MW: 31365.5 Da PI: 9.0548

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.Y6QYT	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	76.6	7e-24	25	95	2	66
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......s 66 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+ +qq +++ e s Araip.Y6QYT 25 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAQFLQIQQQQQQNLETDPIaffptsS 95 79*******************************************64443444444433333335553332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-20	25	70	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	21.574	27	85	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MGMRSNSNKG GEIIQVEGGH IVRSTGRKDR HSKVYTAKGP RDRRVRLSAH TAIEFYDVQD 60 RLGYDRPSKA QFLQIQQQQQ QNLETDPIAF FPTSSATPSM NFQNYPHQMI SRTANNNVNP 120 ITEDLGLSLH PFQQAPSNQH QGTLFGAGSS NNVGFESQYQ KIVAWNNEAA TMDINRVGFM 180 VNPQQNHHHP FLGQSVSGSL QSSFPPPSLR SWGEIQMNPN SSEQQHSRPQ QLIHHASIFG 240 SRFVSDGLAA GFCIPARIQG DQENHHGVAS NTTPSSASPH SHH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-16	32	70	1	39	Putative transcription factor PCF6
5zkt_B	3e-16	32	70	1	39	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.Y6QYT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025687754.1	0.0	transcription factor TCP3
Swissprot	O82277	7e-40	TCP10_ARATH; Transcription factor TCP10
TrEMBL	A0A445A4Y5	1e-154	A0A445A4Y5_ARAHY; Uncharacterized protein
STRING	XP_004505518.1	9e-82	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1163	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	1e-38	TCP domain protein 10

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]