PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.XP7N7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 28968.7 Da PI: 5.6463 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ G g+W +a+ g+ R++k+c++rw +yl Araip.XP7N7 20 KGLWSPEEDEKLMRYMMNNGQGCWGEVAKNAGLQRCGKSCRLRWINYL 67 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.8 | 7.6e-16 | 73 | 116 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l+++++ +lG++ W+ Ia+ ++ gRt++++k++w++ Araip.XP7N7 73 RGAFSPQEQQLIIHLHSLLGNR-WSQIAAQLP-GRTDNEIKNFWNS 116 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 13 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.535 | 15 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.79E-28 | 18 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-11 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-14 | 20 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.11E-9 | 23 | 67 | No hit | No description |
PROSITE profile | PS51294 | 25.217 | 68 | 122 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-25 | 71 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-15 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-15 | 73 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-9 | 75 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MMSKDNDEEK NNKSKNKLRK GLWSPEEDEK LMRYMMNNGQ GCWGEVAKNA GLQRCGKSCR 60 LRWINYLRPD LKRGAFSPQE QQLIIHLHSL LGNRWSQIAA QLPGRTDNEI KNFWNSTIKK 120 RCITITSSST SQNTSESYSS SWLEPHDHNS MEGFTMMPMF SCSSSQSPSI IIDEHLPMPM 180 ENNNMHAAMG INNNNNNMFV PPLLESATTS NVYFDNKVVN VEEDSLISME DWELEDLMMI 240 KSVSSPFLDF PLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-28 | 18 | 124 | 5 | 110 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.XP7N7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016169405.1 | 0.0 | transcription factor MYB46-like | ||||
Refseq | XP_025674113.1 | 0.0 | transcription factor MYB83-like | ||||
TrEMBL | A0A444Y897 | 0.0 | A0A444Y897_ARAHY; Uncharacterized protein | ||||
STRING | EMJ12962 | 8e-79 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF774 | 34 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 5e-65 | myb domain protein 46 |