PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.XN0TT | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 235aa MW: 26706.7 Da PI: 9.8602 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.9 | 6.3e-19 | 35 | 68 | 1 | 34 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdae 34 k i+n + rqvtfskRr gi+KKA+ELSvLCdae Araip.XN0TT 35 KMIDNITARQVTFSKRRRGIFKKAQELSVLCDAE 68 679*****************************97 PP | |||||||
2 | K-box | 50.4 | 9.4e-18 | 94 | 175 | 18 | 99 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + + +kL+ke+ +++R+++Ged + L+l++L qLe++L+++l+++ ++K++ +++ i lqkk el++enk+L++k++ Araip.XN0TT 94 NVNNDKLRKEVADKTHQLRQMKGEDFQGLNLQDLLQLEKALQTGLNRVIETKEKRIMDDIAALQKKGAELEQENKKLKQKMD 175 456689*************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.83E-18 | 27 | 68 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.0E-21 | 27 | 87 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.306 | 27 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-13 | 29 | 49 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-15 | 37 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-13 | 49 | 64 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.63 | 90 | 180 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.6E-15 | 96 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
KGETSLSFLE IQKQHSRVTS KHKRLKMVRQ KIKIKMIDNI TARQVTFSKR RRGIFKKAQE 60 LSVLCDAEDI TARYAQHTHE ISRSERPLEL QLENVNNDKL RKEVADKTHQ LRQMKGEDFQ 120 GLNLQDLLQL EKALQTGLNR VIETKEKRIM DDIAALQKKG AELEQENKKL KQKMDMVKMG 180 KSPLVMDSSD IGMQEVVSSE SLNNACSCIS SAAPSSLEDD SSDTSLKLGL PFPNN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that mediates floral transition in response to vernalization. Promotes inflorescence fate in apical meristems. Acts in a dosage-dependent manner. Probably involved in the transduction of RLK-mediated signaling (e.g. IMK3 pathway). Together with AP1 and SVP, controls the identity of the floral meristem and regulates expression of class B, C and E genes. When associated with SOC1, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development. Confers inflorescence characteristics to floral primordia and early flowering. {ECO:0000269|PubMed:12451184, ECO:0000269|PubMed:12609028, ECO:0000269|PubMed:12881501, ECO:0000269|PubMed:14716314, ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18339670, ECO:0000269|PubMed:18466303, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.XN0TT |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by vernalization in a FLC-independent manner. Repressed by the floral homeotic genes AP1, LFY and SEP3 in emerging floral meristems to establish a floral identity and prevent inflorescence fate. Up-regulated at the shoot apex by SOC1. {ECO:0000269|PubMed:12609028, ECO:0000269|PubMed:14716314, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18339670, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016167140.1 | 1e-147 | MADS-box protein AGL24 isoform X1 | ||||
Refseq | XP_025667194.1 | 1e-147 | MADS-box protein AGL24 isoform X1 | ||||
Swissprot | O82794 | 2e-56 | AGL24_ARATH; MADS-box protein AGL24 | ||||
TrEMBL | A0A445CGJ3 | 1e-108 | A0A445CGJ3_ARAHY; Uncharacterized protein | ||||
STRING | VIT_18s0001g07460.t01 | 4e-76 | (Vitis vinifera) | ||||
STRING | XP_004490446.1 | 3e-77 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF890 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.2 | 3e-47 | MIKC_MADS family protein |