PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.X83S3

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 307aa MW: 35330.3 Da PI: 7.064

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.X83S3	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20	1.8e-06	144	163	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r nL+ H+ Araip.X83S3 144 FSCPLCSKTFNRYNNLQMHM 163 89*****************9 PP
2	zf-C2H2	13.8	0.00017	228	250	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C +C k+F k + ++H +++ Araip.X83S3 228 YMCRKCRKPFAVKGDWRTHEKNC 250 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.783	144	171	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.27E-7	144	166	No hit	No description
SMART	SM00355	0.049	144	166	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.7E-5	144	163	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	146	166	IPR007087	Zinc finger, C2H2
SMART	SM00355	300	191	223	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	9.27E-7	223	248	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.3E-4	224	248	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	100	228	248	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MTDPQSNSLE DDGFFNFMPL HPPHHCSSSS SQSNLHPFAY LNTRFGALTY PDSINYENED 60 EDEEADNETV AVALRIGLPR MDTSYDLQPS RKEEVMADEK QQQEQVNNNV FSGNPFERFN 120 NNNNNKGHYW IPTPSQILIG PTQFSCPLCS KTFNRYNNLQ MHMWGHGSQY RKGPDSLKGT 180 QPTAMLRLPC FCCEQGCKHN IEHPRARPLK DFRTLQTHYK RKHGIKPYMC RKCRKPFAVK 240 GDWRTHEKNC GKVWYCLCGS DFKHKRSLKD HIRAFGDGHG AFGIQSLQEF EDEAPSEAEH 300 DGESSSF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.X83S3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016169309.1	0.0	zinc finger protein WIP2-like
Refseq	XP_025673833.1	0.0	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-109	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A444XYS8	0.0	A0A444XYS8_ARAHY; Uncharacterized protein
STRING	GLYMA12G36660.2	1e-138	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-109	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]