PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.X5TTH
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TALE
Protein Properties Length: 638aa    MW: 70198 Da    PI: 8.0486
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.X5TTHgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-094785151954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Araip.X5TTH 478 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 515
                  664559******************************88 PP
2BELL93.51.9e-303554091872
         BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  +Vd+rY++y+eq+++v++sF+ v+g+g+a pYt+lA+ka+SrhFrcLkdai+ q+
  Araip.X5TTH 355 KVDRRYSHYCEQMHMVVNSFDLVMGYGAAVPYTALAQKAMSRHFRCLKDAITTQL 409
                  7***************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-64280407IPR006563POX domain
PfamPF075268.7E-39285406IPR006563POX domain
PROSITE profilePS5007112.568456519IPR001356Homeobox domain
CDDcd000862.06E-12459520No hitNo description
SMARTSM003892.0E-9459523IPR001356Homeobox domain
SuperFamilySSF466893.94E-17460526IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-28462525IPR009057Homeodomain-like
PfamPF059203.1E-18476515IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MSQDYHHHNQ GIFTFSNNGF ERSTQVTNQE HHHQHQHHLA QQIRRDKVRM FNFPPVADAA  60
AGELLEQPMI ATFRSPTTTR SLGSDWYAGN RQGMITGLGA LGDNSKNNHN QHDQSNLNNG  120
DSAMQLFLMN PQTTTRSPSP PSSHHTTPTP PSSSSTLHML LPNPNPNTSV QGFHGGGGTF  180
NQFTWAPDSA QEAQGLSLSL SSSLQHLEAA KAEELRMGES GFLFYNQGGG GPSSSSSSAQ  240
YPYKNLPSHH QQHQALHIQG TSLGQNHHQG PIGFGSSSSL GLVNVLRNSK YVKAAQELLE  300
EFCSVGRGQF KKNKFTRQLS NPSSNQGGAA AASSSSSKEL PPLSASDRIE HQRRKVDRRY  360
SHYCEQMHMV VNSFDLVMGY GAAVPYTALA QKAMSRHFRC LKDAITTQLK HSCEVLGEKE  420
GVGTTGLTKG ETPRLKMLEQ SLRQQRAFHQ MGMMEQEAWR PQRGLPERSV NILRAWLFEH  480
FLHPYPSDAD KHLLARQTGL SRNQVSNWFI NARVRLWKPM VEDMYQQELK DAEDSDPSLA  540
AINRQGLEIQ AKQPATSSTA NTTVTPPVVS QCFDSEQLLN EDTCGHGSIV SAEYGSVAAM  600
TEIGSSSSTL IRFGTTAAPG DVSLTLGLRH TGNNSFLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16465522562Homeobox protein Meis2
3k2a_B3e-16465522562Homeobox protein Meis2
4xrm_A3e-16465522562Homeobox protein Meis2
4xrm_B3e-16465522562Homeobox protein Meis2
4xrs_A3e-16465522158Homeobox protein Meis1
4xrs_B3e-16465522158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.X5TTH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016184239.10.0BEL1-like homeodomain protein 4 isoform X1
RefseqXP_016184247.10.0BEL1-like homeodomain protein 4 isoform X1
RefseqXP_025627104.10.0BEL1-like homeodomain protein 4
RefseqXP_025627105.10.0BEL1-like homeodomain protein 4
SwissprotQ94KL51e-140BLH4_ARATH; BEL1-like homeodomain protein 4
SwissprotQ9SW801e-140BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A445APR50.0A0A445APR5_ARAHY; Uncharacterized protein
STRINGGLYMA16G25770.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-129BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]