PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.X395U
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 503aa    MW: 55024.4 Da    PI: 7.4813
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.X395UgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.17.5e-28124180259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +DgynWrKYGqK+vkg+ef rsYY+Ct+++C++kk++e+s+ d+++++ +  g+Hnh+
  Araip.X395U 124 KDGYNWRKYGQKNVKGNEFIRSYYKCTHPNCQAKKQLEQSN-DGQITDSICIGQHNHP 180
                  7***************************************9.***************8 PP
2WRKY104.84.4e-33300358159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dgy+WrKYGqK vkg+ +prsYYrC+s+gCpvkk+ver+++d kvv++tYeg+H+he
  Araip.X395U 300 VNDGYRWRKYGQKLVKGNANPRSYYRCSSPGCPVKKHVERASHDSKVVITTYEGQHDHE 358
                  58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.3118182IPR003657WRKY domain
SuperFamilySSF1182905.62E-23119182IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-24119182IPR003657WRKY domain
SMARTSM007741.9E-30123181IPR003657WRKY domain
PfamPF031062.5E-22124180IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-34287360IPR003657WRKY domain
SuperFamilySSF1182901.57E-28292360IPR003657WRKY domain
PROSITE profilePS5081134.589295360IPR003657WRKY domain
SMARTSM007749.1E-38300359IPR003657WRKY domain
PfamPF031069.0E-26301357IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MEAVTVVPMV SSEETADHNV PYAIPLQRAS PHSDITESQG IHGAETSSSK QKEETSIPSA  60
VAQNKVKDSD VTASALQSDR QRSTHIAASV EKLVQSPDTP FREKRHPSQS GHDSPSIIRE  120
RVSKDGYNWR KYGQKNVKGN EFIRSYYKCT HPNCQAKKQL EQSNDGQITD SICIGQHNHP  180
RPQSNITKPV GPVLPVLEEG LDKPRVANVE VEDKSLNEHA SVPQQMKFSH SLQITNVPAA  240
DLMKAAHSQL TTANDEVHNN DYPDSKRQRI DDSNIEVSVA DKSTCASRVV VQTSSEVDFV  300
NDGYRWRKYG QKLVKGNANP RSYYRCSSPG CPVKKHVERA SHDSKVVITT YEGQHDHEIP  360
PGRTVTHNAA TNAQTTTING KPGTNSVSNP VSTDTRGSRS NEKVNGNSIT KSEAGKSPES  420
KLNGQQQQKN ENAVAKQDYV GANITCQSNS EDPCRSKSNE QPKDDVETKS EGKNGSPNVV  480
VVHDTPGQEG QLKKQSASDA EAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-38122362176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.X395U
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150363e-78AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016166668.10.0WRKY transcription factor 1 isoform X2
RefseqXP_025667749.10.0WRKY transcription factor 1 isoform X2
SwissprotQ9SI376e-83WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A444YFT30.0A0A444YFT3_ARAHY; Uncharacterized protein
STRINGXP_007142503.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.21e-83zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]