PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.X2KK1

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 352aa MW: 39942.6 Da PI: 5.0644

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.X2KK1	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.3	5.3e-52	6	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrFhPtdeel+ +yLk+kve+ ++el evi+ +d+yk++Pw+Lp k + +++ ew+fF++rd+ky++g+r+nratk+gyWkatgkdk+v+++ Araip.X2KK1 6 LPPGFRFHPTDEELIGYYLKRKVEELEIEL-EVIPVIDLYKFDPWELPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDKKVVCQs 102 79**************************.99**********95334445667**********************************86 PP NAM 96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++g +ktLvfy+grap g +tdWvmheyrl Araip.X2KK1 103 spstsIMKATGYRKTLVFYRGRAPLGDRTDWVMHEYRL 140 554443344*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-59	4	163	IPR003441	NAC domain
PROSITE profile	PS51005	57.028	6	163	IPR003441	NAC domain
Pfam	PF02365	2.1E-29	7	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MGGASLPPGF RFHPTDEELI GYYLKRKVEE LEIELEVIPV IDLYKFDPWE LPEKSFLPKR 60 DLEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDKKVVC QSSPSTSIMK ATGYRKTLVF 120 YRGRAPLGDR TDWVMHEYRL CDDLGQDSPS FQGAYALCRV IKKNDKASDY KGKRGVSSSK 180 NENETSMRLS SSKEHLSISA DVSSQASQLC SESRYSSPIA SPCAYNVAAT AVFEPPSVDT 240 NPSTFLVSPD MILDSSKDFA QTQDAISEFL PHHELLSTMT PWQSLEHTEI SSSSSYSNFN 300 GEIEFSDELG LIGRMSRYSG QVDMLDFYGN EEVLYEYEGY DQINSIRDPR QF

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MGGASLPPGF RFHPTDEELI GYYLKRKVEE LEIELEVIPV IDLYKFDPWE LPEKSFLPKR  60
DLEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDKKVVC QSSPSTSIMK ATGYRKTLVF  120
YRGRAPLGDR TDWVMHEYRL CDDLGQDSPS FQGAYALCRV IKKNDKASDY KGKRGVSSSK  180
NENETSMRLS SSKEHLSISA DVSSQASQLC SESRYSSPIA SPCAYNVAAT AVFEPPSVDT  240
NPSTFLVSPD MILDSSKDFA QTQDAISEFL PHHELLSTMT PWQSLEHTEI SSSSSYSNFN  300
GEIEFSDELG LIGRMSRYSG QVDMLDFYGN EEVLYEYEGY DQINSIRDPR QF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-50	5	167	16	169	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-50	5	167	16	169	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-50	5	167	16	169	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-50	5	167	16	169	NO APICAL MERISTEM PROTEIN
4dul_A	1e-50	5	167	16	169	NAC domain-containing protein 19
4dul_B	1e-50	5	167	16	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.X2KK1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016201544.1	0.0	NAC domain-containing protein 72
Swissprot	O49697	1e-103	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A371FFT9	0.0	A0A371FFT9_MUCPR; NAC domain-containing protein 71 (Fragment)
STRING	GLYMA05G23840.1	1e-176	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6722	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	2e-92	NAC domain containing protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]