PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.X1ZFJ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 130aa MW: 15307.6 Da PI: 10.4316 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20 | 1.9e-06 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Araip.X1ZFJ 6 FVCEVCNKGFQREQNLQLHRRGH 28 89*******************88 PP | |||||||
2 | zf-C2H2 | 15 | 7.4e-05 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Araip.X1ZFJ 83 WKCHKCSKKYAVQSDWKAHSKTC 105 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.0E-7 | 5 | 28 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-6 | 5 | 28 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.094 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0041 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 5.1E-6 | 6 | 28 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 230 | 48 | 78 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.0E-4 | 71 | 104 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.0E-7 | 78 | 103 | No hit | No description |
SMART | SM00355 | 140 | 83 | 103 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKNPN KEPKRKVYLC PEPTCVHHHP 60 SRALGDLTGI KKHFSRKHGE KKWKCHKCSK KYAVQSDWKA HSKTCGTKEY RCDCGTLFSR 120 THNISHEKDT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-22 | 79 | 126 | 3 | 51 | Zinc finger protein JACKDAW |
5b3h_F | 5e-22 | 79 | 126 | 3 | 51 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.X1ZFJ |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC115687 | 1e-49 | AC115687.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0091J11, from chromosome 3, complete sequence. | |||
GenBank | AC116426 | 1e-49 | AC116426.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0058P18, from chromosome 3, complete sequence. | |||
GenBank | AP014959 | 1e-49 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-49 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015946932.1 | 1e-85 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_016181115.1 | 1e-85 | protein indeterminate-domain 5, chloroplastic isoform X1 | ||||
Refseq | XP_020968622.1 | 1e-85 | protein indeterminate-domain 5, chloroplastic isoform X1 | ||||
Refseq | XP_020968623.1 | 6e-86 | protein indeterminate-domain 5, chloroplastic isoform X2 | ||||
Refseq | XP_020988184.1 | 1e-85 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_025624986.1 | 1e-85 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_025624987.1 | 1e-85 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_025624988.1 | 1e-85 | protein indeterminate-domain 5, chloroplastic | ||||
Swissprot | Q8GYC1 | 3e-76 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | A0A3Q7YAH1 | 3e-78 | A0A3Q7YAH1_CICAR; protein indeterminate-domain 4, chloroplastic-like isoform X2 | ||||
STRING | XP_004496222.1 | 1e-78 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02080.2 | 8e-69 | indeterminate(ID)-domain 4 |
Publications ? help Back to Top | |||
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