PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.X1WI1
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Trihelix
Protein Properties Length: 371aa    MW: 41509.2 Da    PI: 5.7199
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.X1WI1genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.68.4e-29256340186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW++ ev+aLi++r++me+++    +k   Wee+s++m + g++rs+k+Ckekwen+nk+yk++  + kkr  ++s++cpyf++l+
  Araip.X1WI1 256 RWPDVEVQALITLRTSMEQKFHLMGSKVSIWEEISEAMNKMGYHRSAKKCKEKWENINKYYKRTIGSGKKR-RQNSKSCPYFNELD 340
                  8****************************************************************999998.788889******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.12249313IPR017877Myb-like domain
SMARTSM007170.0035253315IPR001005SANT/Myb domain
PfamPF138379.2E-22255341No hitNo description
CDDcd122032.54E-24255319No hitNo description
Gene3DG3DSA:1.10.10.605.2E-4255312IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDLLAAATAA AADGDNFPVP DHVAPFPDSG DLLYAAIPTS LRSNNPQKLR PIRSVAAARA  60
SSFHRNGQLP EPPDTGGSPS VEEDRLGSGS GHDDGRTVPL CQESGSSLDD DDGNDIENSS  120
GSGKHPGMPK RKRKMERRLE DFVENMVKKV MEKQDQMHKQ LVDMIEKKEK ERVMREEAWK  180
QQEIERIRKD EEARTQERSR NLALISVIQN LLGHEIQIPQ PAEVSSKGEE DEPGHEGEEA  240
NAQKSLGVSG EGSNNRWPDV EVQALITLRT SMEQKFHLMG SKVSIWEEIS EAMNKMGYHR  300
SAKKCKEKWE NINKYYKRTI GSGKKRRQNS KSCPYFNELD VLYSNGLLNL GNPLSSSTND  360
VSKIEKEENE T
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.X1WI1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016197577.10.0trihelix transcription factor GTL1
RefseqXP_025646057.10.0trihelix transcription factor GTL1
TrEMBLA0A444ZDB20.0A0A444ZDB2_ARAHY; Uncharacterized protein
STRINGXP_007147613.11e-136(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.14e-50Trihelix family protein