PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.WH6UQ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family DBB
Protein Properties Length: 184aa    MW: 20360.2 Da    PI: 7.0915
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.WH6UQgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72e-07433534
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                  C+ +e+  ++ fC  ++  lC+ C ++ H
  Araip.WH6UQ  4 LCDACESAAAIVFCAADEAALCRACDEKVH 33
                 7**************************998 PP
2zf-B_box30.95.7e-105291237
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                 + ++C+ +e+ ++ ++Ce++++ lC +C +  H g    H
  Araip.WH6UQ 52 DVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGgkrtH 91
                 6799**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.4E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.239147IPR000315B-box-type zinc finger
CDDcd000211.43E-6345No hitNo description
PfamPF006437.3E-6342IPR000315B-box-type zinc finger
SuperFamilySSF578459.16E-64886No hitNo description
SMARTSM003362.1E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501199.1585196IPR000315B-box-type zinc finger
PfamPF006439.1E-85290IPR000315B-box-type zinc finger
CDDcd000211.81E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MRTLCDACES AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLASP SDVPRCDICE  60
NAPAFFYCET DGSSLCLQCD MIVHVGGKRT HGRYLLFRQR VEFPGDKPSN IENPASQPVE  120
PGETKRGQNP LPKLKMGEKQ QNHRMPLLST PDPDADGHAK METKMIDLNM KPNRIHEQAS  180
NNQP
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.WH6UQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0954481e-171BT095448.1 Soybean clone JCVI-FLGm-19K10 unknown mRNA.
GenBankBT0987721e-171BT098772.1 Soybean clone JCVI-FLGm-12P20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201935.11e-136B-box zinc finger protein 18 isoform X2
RefseqXP_020978711.11e-136B-box zinc finger protein 18 isoform X1
RefseqXP_020978712.11e-136B-box zinc finger protein 18 isoform X1
RefseqXP_025653558.11e-136B-box zinc finger protein 18 isoform X1
RefseqXP_025653559.11e-136B-box zinc finger protein 18 isoform X2
SwissprotC0SVM52e-74BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A444Z9A51e-135A0A444Z9A5_ARAHY; Uncharacterized protein
STRINGGLYMA01G37370.11e-128(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-76DBB family protein