PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.WB4KA
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 551aa    MW: 61645.5 Da    PI: 6.0026
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.WB4KAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.14.6e-1291785491374
         GRAS   1 lvelLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  l+e+L+ cA+ v+++d + a   + + l +++s +gdpmqRl ay++e+L+ar  +s+s +ykal++++ +   s++ +++++++++++P+ kf+++ 
  Araip.WB4KA 178 LREVLILCAQSVADDDIQTALGWMDNvLVKMVSVAGDPMQRLGAYMLEGLRARFESSGSLIYKALKCEQPT---SKDLMTYMHVLYQICPYWKFAYIS 272
                  6789****************99997626778***************************************9...9999999***************** PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                  aN  I ea+++e r+HiiDf+i qG+QW  L+qaLa Rp+gpp +R+Tg+++++s+  +   l+ +g++L+++A++lgvpfef+  +a   +++ele+
  Araip.WB4KA 273 ANVVIGEAMQNEARIHIIDFQIAQGTQWFLLMQALARRPGGPPFIRVTGIDDSQSNhaRGGGLHIVGKKLSEYANSLGVPFEFHS-AAMCGSEVELEN 369
                  ****************************************************9988889999***********************.899********* PP

         GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                  L + pgEalaVn+ + lh+++desv++e++rd++L+lvkslsPkvv++veqe+++n+++F++rf+e+l+yy+a+f+s+++  pr++++ri+ E+++++
  Araip.WB4KA 370 LVIWPGEALAVNFPFVLHHMPDESVTTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFVETLNYYTAMFESIDVARPRDDKQRISAEQHCVA 467
                  ************************************************************************************************** PP

         GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  r+ivn++aceg er+erhe l+kWr+r+++aGF++ p+s++a++ +++ll++++++ yrve+++g+l+lgWk+r++ + SaW+
  Araip.WB4KA 468 RDIVNMIACEGPERVERHELLGKWRSRFSMAGFSACPMSSSAMAAVRSLLNEFNEN-YRVEQRDGALYLGWKNRAMATSSAWT 549
                  ******************************************************55.*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.201152530IPR005202Transcription factor GRAS
PfamPF035141.6E-126178549IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MQTSQKHSTS AGIHIYHQPV QGIDPYNHYQ ILQSNSCHDI HDSSSQGTNV SFEASKEQYY  60
TLDSSPATNG LIGCDSPSCA SVSSSRSPLS PQNSQSYYSD QHQSSDNNYG SPISGYSSAE  120
DSYELKNKLR ELEITLLGPE PDIVDSCHCC FKSVHQGASP MSKYNWVQIA EMIPKLDLRE  180
VLILCAQSVA DDDIQTALGW MDNVLVKMVS VAGDPMQRLG AYMLEGLRAR FESSGSLIYK  240
ALKCEQPTSK DLMTYMHVLY QICPYWKFAY ISANVVIGEA MQNEARIHII DFQIAQGTQW  300
FLLMQALARR PGGPPFIRVT GIDDSQSNHA RGGGLHIVGK KLSEYANSLG VPFEFHSAAM  360
CGSEVELENL VIWPGEALAV NFPFVLHHMP DESVTTENHR DRLLRLVKSL SPKVVTLVEQ  420
ESNTNTSPFF QRFVETLNYY TAMFESIDVA RPRDDKQRIS AEQHCVARDI VNMIACEGPE  480
RVERHELLGK WRSRFSMAGF SACPMSSSAM AAVRSLLNEF NENYRVEQRD GALYLGWKNR  540
AMATSSAWTC Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-5918554925378Protein SCARECROW
5b3h_D8e-5918554925378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.WB4KA
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016197555.10.0scarecrow-like protein 13
RefseqXP_025646027.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A444ZD530.0A0A444ZD53_ARAHY; Uncharacterized protein
STRINGGLYMA15G12320.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13