PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.W5573
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SBP
Protein Properties Length: 298aa    MW: 32451.1 Da    PI: 9.4447
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.W5573genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP125.12.8e-3938106977
                  ---TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
          SBP   9 adlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                   dls+ak y++rhkvC +hsk+p+v+vsgl+qrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ 
  Araip.W5573  38 LDLSDAKAYYSRHKVCAMHSKSPTVTVSGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPP 106
                  69*****************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114127.51328105IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.01E-3538109IPR004333Transcription factor, SBP-box
PfamPF031105.4E-2938104IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.1E-283892IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAPGGRTATN NHKNQPPSST VESLNGLKFG QKIYFEDLDL SDAKAYYSRH KVCAMHSKSP  60
TVTVSGLQQR FCQQCSRFHQ LPEFDQGKRS CRRRLAGHNE RRRKPPPSSN FLTSRYARLS  120
SSLFDDSGKG GSFVMEFASY PKLGLRNTVP NPRSSQPISG TLSWQGYSET SSDLFLQGSV  180
GGTSIPNVRH PPPSSESYAG VADSSCALSL LSSQTWGSSN MAPSLGLNNM LNFSGAPVTQ  240
LAASSHGESI HQVPNPWWCP NKVVPDLGLG QFSQLPNSQV PGEFDALEPG RRHHGNLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-29391041984squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.W5573
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3122300.0KF312230.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207446.10.0squamosa promoter-binding-like protein 17
SwissprotA3C0571e-53SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A444YH850.0A0A444YH85_ARAHY; Uncharacterized protein
STRINGGLYMA19G32800.11e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.18e-47squamosa promoter binding protein-like 9