PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.W4U3Q

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

CAMTA

Protein Properties

Length: 938aa MW: 106808 Da PI: 7.5452

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.W4U3Q	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	161.6	1.5e-50	60	175	3	118
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 + k+rwl+++ei+aiL n + ++++ ++ ++pksg++iL++rk++r+frkDGy+wkkk dgktv+E+he+LKvg+ e +++yYah+++np + rrcyw Araip.W4U3Q 60 EAKSRWLRPNEIHAILSNSKYFTIHVKPVNKPKSGRIILFDRKMLRNFRKDGYNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPGLVRRCYW 157 459********************************************************************************************* PP CG-1 101 lLeeelekivlvhylevk 118 lL+++le+ivlvhy+e++ Araip.W4U3Q 158 LLDKRLEHIVLVHYRETQ 175 *************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	73.785	54	180	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	4.6E-72	58	175	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.6E-45	60	173	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	6.1E-6	359	473	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	3.2E-4	384	470	IPR002909	IPT domain
SuperFamily	SSF81296	6.02E-15	384	471	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	5.13E-19	558	682	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	8.8E-7	567	649	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	5.4E-17	569	683	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.01E-15	569	679	No hit	No description
PROSITE profile	PS50297	15.433	575	652	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	10.98	620	652	IPR002110	Ankyrin repeat
SMART	SM00248	2.9E-5	620	649	IPR002110	Ankyrin repeat
SMART	SM00248	2400	659	690	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	2.07E-6	733	834	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	27	764	786	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.98	765	794	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.906	784	813	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	7.5E-4	806	828	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.091	807	831	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.6E-4	811	828	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	11	886	908	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.187	888	916	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 938 aa Download sequence Send to blast
MFNDDGAATK LNGSTCGFRD TWLPHIASYV YELVYPVNLL IISLDLLFSI DLDVENTMEE 60 AKSRWLRPNE IHAILSNSKY FTIHVKPVNK PKSGRIILFD RKMLRNFRKD GYNWKKKNDG 120 KTVKEAHEHL KVGNEERIHV YYAHGQDNPG LVRRCYWLLD KRLEHIVLVH YRETQESQVS 180 PVTPVNSHSS SASDQPWLSE ELDSGTNTAY ASGFNDSLTV ESHEMKLHEL NTLEWDDLVL 240 SNDNTSTIAT SGNVQSFNQQ DQSFLKGSSG NVASNLVPEI HSFSKLAQPI AESNSVPYSI 300 PDSVDFQRTS PISLAGVDSS NTLVNPSLQS QDSFGMWINN MISDSPPCSV ESALESSISS 360 SVQGQYSSLV AGNQLSSLPE QVFTITDVSP TWASSTEKTK ILVTGLFHND YQHLAKSNLY 420 CVCSDASIPV ETVQLGVYRC WVSPHSPGFV NLYLSFDGRK PISQVVNFEY RTPLLHDPTA 480 FMEQKYDWEE FRLQIRLTNL LFDTKKSLDI FSSKVSPKSL KEARKFAFKT SFISKSWQYL 540 MKSTEENTIP FPQAKDDLFQ IALKNRLKEW LLERISLGVK TTEHDKQGQG VIHLCAILGY 600 TWAVSLFSWS GLSLDFRDKF GWTALHWAAY YGREKMVGTL LSFGAKPNLV TDPTPQNPGG 660 CTAADLAYIK GYDGLAAYLS EKSLVEQVND MSLAGNISGP LETTTVDIGN TENLTEDQLY 720 LKETLASYRT AAEAAARIQS AFREHSLKLR SMAIESLSPE DQQRQIVAAM KIQHAFRNYE 780 TRKMMAAAAR IQHRYRTFKL RREFLHMKRQ VIKIQAAFRG FQARKQYRKI IWSVGVLEKV 840 ILRWRLKRKG FRGLQVNPDQ EMKDETQGSD IEEDFFRTSR KQAEERVERS VVRVQAMFRS 900 KKAQEEYRRM KLAHNQAQLE LEFEELLICG DDMITEKQ

Sequence ? help Back to Top

Protein Sequence Length: 938 aa Download sequence Send to blast

MFNDDGAATK LNGSTCGFRD TWLPHIASYV YELVYPVNLL IISLDLLFSI DLDVENTMEE  60
AKSRWLRPNE IHAILSNSKY FTIHVKPVNK PKSGRIILFD RKMLRNFRKD GYNWKKKNDG  120
KTVKEAHEHL KVGNEERIHV YYAHGQDNPG LVRRCYWLLD KRLEHIVLVH YRETQESQVS  180
PVTPVNSHSS SASDQPWLSE ELDSGTNTAY ASGFNDSLTV ESHEMKLHEL NTLEWDDLVL  240
SNDNTSTIAT SGNVQSFNQQ DQSFLKGSSG NVASNLVPEI HSFSKLAQPI AESNSVPYSI  300
PDSVDFQRTS PISLAGVDSS NTLVNPSLQS QDSFGMWINN MISDSPPCSV ESALESSISS  360
SVQGQYSSLV AGNQLSSLPE QVFTITDVSP TWASSTEKTK ILVTGLFHND YQHLAKSNLY  420
CVCSDASIPV ETVQLGVYRC WVSPHSPGFV NLYLSFDGRK PISQVVNFEY RTPLLHDPTA  480
FMEQKYDWEE FRLQIRLTNL LFDTKKSLDI FSSKVSPKSL KEARKFAFKT SFISKSWQYL  540
MKSTEENTIP FPQAKDDLFQ IALKNRLKEW LLERISLGVK TTEHDKQGQG VIHLCAILGY  600
TWAVSLFSWS GLSLDFRDKF GWTALHWAAY YGREKMVGTL LSFGAKPNLV TDPTPQNPGG  660
CTAADLAYIK GYDGLAAYLS EKSLVEQVND MSLAGNISGP LETTTVDIGN TENLTEDQLY  720
LKETLASYRT AAEAAARIQS AFREHSLKLR SMAIESLSPE DQQRQIVAAM KIQHAFRNYE  780
TRKMMAAAAR IQHRYRTFKL RREFLHMKRQ VIKIQAAFRG FQARKQYRKI IWSVGVLEKV  840
ILRWRLKRKG FRGLQVNPDQ EMKDETQGSD IEEDFFRTSR KQAEERVERS VVRVQAMFRS  900
KKAQEEYRRM KLAHNQAQLE LEFEELLICG DDMITEKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.W4U3Q

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016197893.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Refseq	XP_025646520.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A444WPP0	0.0	A0A444WPP0_ARAHY; Uncharacterized protein
STRING	GLYMA15G15350.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]