PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.W23GC
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 442aa    MW: 50182.4 Da    PI: 5.5026
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.W23GCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.81.7e-130724422374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  +e L +cA+a+s++d+e +++l+++l++++s +gdp+qRl ay++eAL arla s+s++y+al+++e +     e l+++++++e++P+lkf++l aN
  Araip.W23GC  72 KEMLCACAKAMSENDMETTEWLISELQKMVSISGDPVQRLGAYMLEALVARLATSGSTIYNALRCKEPT---GNELLSYMHMLYEICPYLKFGYLSAN 166
                  789*****************************************************************9...99************************ PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                    I ea++ e++vHiiDf+i+qG+QW++L++aLa+Rp+g+p++RiT +++++s   +   l+ +gerL+++A++++v+fef++l + + ++++l++L+
  Araip.W23GC 167 GSIAEAMKDENEVHIIDFQINQGVQWISLIKALAARPNGSPKIRITCFDDSTSAfaRGGGLNIVGERLSRIANSCKVQFEFHAL-EVSPSEVKLDDLD 263
                  **************************************************99889999*************************6.778999******* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  ++pgE++aVn++++lh+l+desv+++  +r+++L+l k lsPkvv++veq++++++ +F+ rf+e+++yy a+f+s++a lpr+++eri+vE+++l+r
  Araip.W23GC 264 IRPGESIAVNFAMMLHHLPDESVDSRInHRNRLLRLAKFLSPKVVTLVEQDCNTSNLPFFPRFVETMNYYLAVFESIDAALPRDHKERINVEQHCLAR 361
                  ***********************988779********************************************************************* PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  e+vn++acegaer+erhe l+kWr r+e+aGF p+pls+++++ ++ l + ++++ y++ee++g+l+lgWk+++Lv+ +aWr
  Araip.W23GC 362 EVVNLIACEGAERVERHEALKKWRLRFERAGFAPYPLSSYVNSLIRQLQESYPGQ-YTLEERDGALLLGWKNQSLVVSCAWR 442
                  *****************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.85545423IPR005202Transcription factor GRAS
PfamPF035146.0E-12872442IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MLKQDRIEHD NESCLTHDQN DLSNKIRELE SAMLGSDADI LNTYGAAMIP QECDSFLRWR  60
KMMEVISRGD LKEMLCACAK AMSENDMETT EWLISELQKM VSISGDPVQR LGAYMLEALV  120
ARLATSGSTI YNALRCKEPT GNELLSYMHM LYEICPYLKF GYLSANGSIA EAMKDENEVH  180
IIDFQINQGV QWISLIKALA ARPNGSPKIR ITCFDDSTSA FARGGGLNIV GERLSRIANS  240
CKVQFEFHAL EVSPSEVKLD DLDIRPGESI AVNFAMMLHH LPDESVDSRI NHRNRLLRLA  300
KFLSPKVVTL VEQDCNTSNL PFFPRFVETM NYYLAVFESI DAALPRDHKE RINVEQHCLA  360
REVVNLIACE GAERVERHEA LKKWRLRFER AGFAPYPLSS YVNSLIRQLQ ESYPGQYTLE  420
ERDGALLLGW KNQSLVVSCA WR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-60714425375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.W23GC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016166626.10.0scarecrow-like protein 21 isoform X1
RefseqXP_016166627.10.0scarecrow-like transcription factor PAT1 isoform X2
RefseqXP_016166628.10.0scarecrow-like transcription factor PAT1 isoform X2
RefseqXP_025666148.10.0scarecrow-like protein 21 isoform X1
RefseqXP_025666149.10.0scarecrow-like transcription factor PAT1 isoform X2
RefseqXP_025666150.10.0scarecrow-like transcription factor PAT1 isoform X2
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A444YFC60.0A0A444YFC6_ARAHY; Uncharacterized protein
STRINGXP_007142381.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]