PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.W21RY | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 250aa MW: 29041.5 Da PI: 9.9801 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 49.1 | 1.9e-15 | 11 | 96 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 kfY++ +k +GFs++++++++ ++i+++ vCs+eg r+++ + + +t+++ +C a++ v+ +k + w ++k+ l+H+H+++ Araip.W21RY 11 KFYKHCSKLAGFSTKIRNTTRD--GDKIKNQLIVCSREGMRKSKISP---TLKTNPSAGLNCPARIYVQIMKdISLWTISKVILNHSHPCC 96 6****************98776..8889**************99877...999******************9899*************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.6E-12 | 11 | 96 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MIFKTLEEAG KFYKHCSKLA GFSTKIRNTT RDGDKIKNQL IVCSREGMRK SKISPTLKTN 60 PSAGLNCPAR IYVQIMKDIS LWTISKVILN HSHPCCADQA EMLKQHRELS MFVRRTIETY 120 EEAGIRPSKT YQSFVAAAGS HRELELYENR HIWILVYLDH HFWARVRSTQ RSESMHSFFN 180 KFITRNSSLR QFMKQYDNCL ASKEQAEREF DAADFHIVIP CTTKLAIEAQ FSVYIPMRSS 240 GKFKLNSEVK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.W21RY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016177749.1 | 1e-104 | uncharacterized protein LOC107620038 | ||||
TrEMBL | A0A444WXS8 | 1e-156 | A0A444WXS8_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 4e-09 | FAR1 family protein |