PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.VZF8R | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | LBD | ||||||||
Protein Properties | Length: 236aa MW: 25721.4 Da PI: 8.3335 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.7 | 2.7e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C++ C+l+p++ p++q +++ +v+k+FG++ ++++++++pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e Araip.VZF8R 2 SCNGCRVLRKGCSETCMLRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISNVPEAQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVE 99 6***********************************************************************************************99 PP DUF260 94 lall 97 ++l+ Araip.VZF8R 100 TVLR 103 8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.778 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.7E-27 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCMLR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISNVPEAQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPS PEFMGMESAG 120 PVVATDEASE AEVTCGDIWK KVRDPNPSCR FTSSRSTRVA AGAAGKRKRL EEVTRVQTAA 180 DLDLRLTPIF LQKIADYRRR PGSPSMTSEE SVTTTAEIGG DQWGHSGERK VLNLFI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.VZF8R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016185912.1 | 1e-175 | LOB domain-containing protein 38 | ||||
Refseq | XP_025627442.1 | 1e-175 | LOB domain-containing protein 38 | ||||
Swissprot | Q9SZE8 | 3e-87 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A445ESX9 | 1e-173 | A0A445ESX9_ARAHY; Uncharacterized protein | ||||
STRING | XP_007155842.1 | 1e-121 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 6e-87 | LOB domain-containing protein 39 |