PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.VT4Q1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GeBP | ||||||||
Protein Properties | Length: 312aa MW: 34788 Da PI: 10.013 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 85.5 | 6.9e-27 | 74 | 170 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkks..isfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 lfqr++seeDei +L+Gl +f aktgk+p++ d+fy+f+k+s i ++vs +ql +KirrLKkKf+++ +k k+gk + k+h+ ++++l k +Wg Araip.VT4Q1 74 LFQRVFSEEDEIGILKGLSEFIAKTGKEPYKCADEFYDFMKGSnlIRANVSCNQLKDKIRRLKKKFENNLEKEKNGKG-TTLKPHELEALQLGKNVWG 170 79**************************************975559**************************888887.6779**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.1E-25 | 75 | 170 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MVSKPSSSSS KPSPKLKSQP SASVSQTKSG SKRAAENSID HSNQPKRGKK AQEDHAVGSV 60 EEDPQKSRDE FKSLFQRVFS EEDEIGILKG LSEFIAKTGK EPYKCADEFY DFMKGSNLIR 120 ANVSCNQLKD KIRRLKKKFE NNLEKEKNGK GTTLKPHELE ALQLGKNVWG HDGRGGEAVR 180 NETAKKDTVN NEKAAKSTPK KALVPHSNGK AEAKSKLNSE PLDTNEGRRM SEFSVTSLAL 240 TSMLRYDGTF GKPFGEDYIR KGIELLGVSK REDIEARWRK FKDAENKLYA EIAEFYAEQA 300 KLIYQANSSS SS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.VT4Q1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016176119.1 | 0.0 | probable transcription factor At1g11510 isoform X1 | ||||
Refseq | XP_025676135.1 | 0.0 | probable transcription factor At1g11510 | ||||
TrEMBL | A0A445C6H3 | 0.0 | A0A445C6H3_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 4e-15 | DNA-binding storekeeper protein-related transcriptional regulator |