PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.VQX17 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 112aa MW: 12895.9 Da PI: 10.7942 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 42.9 | 1.6e-13 | 12 | 93 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +Y +YA ++ F v+++ + k + C+ g+r+++ k+ +r++++ t+Cka+ + ++k +g+w+++++e H+H+l+p Araip.VQX17 12 YYYRYAARTDFVVKIKPPVGR------LKTALHCNGDGYRTSRVKA---PKRRKTVASTNCKARYYLALDKmTGQWRISRVEVSHSHPLNP 93 8**************987766......7789************999...778888999************99****************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-10 | 12 | 93 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MCFGTLEDAR AYYYRYAART DFVVKIKPPV GRLKTALHCN GDGYRTSRVK APKRRKTVAS 60 TNCKARYYLA LDKMTGQWRI SRVEVSHSHP LNPKLSGIFS TNRQKNLIQQ ND |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 49 | 55 | KAPKRRK |
2 | 51 | 57 | PKRRKTV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.VQX17 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025625519.1 | 1e-54 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A445A5C8 | 7e-66 | A0A445A5C8_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF29723 | 2 | 2 |