PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.VL6YY

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

G2-like

Protein Properties

Length: 376aa MW: 42090.5 Da PI: 8.1137

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.VL6YY	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.7	2.3e-32	206	261	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rF++a++qLGG++ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Araip.VL6YY 206 KQRRCWSQELHKRFLQALQQLGGPDSATPKQIRELMKVDGLTNDEVKSHLQKYRLH 261 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.556	203	263	IPR017930	Myb domain
SuperFamily	SSF46689	8.24E-19	204	264	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-29	204	264	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-28	206	261	IPR006447	Myb domain, plants
Pfam	PF00249	4.3E-8	208	259	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MQRLKTMMGS RDYIQALEHE RRKIQVFSKE LPLSLDLVTQ AIEACRQQLS ETTTEYNMNG 60 HNSECSEQTT STDNGPVLEE FIPIKKRPSS PHEEEEDDDD DEQHSHHHRH KISKDNTDKR 120 KSDWLRSVQL WNNPEPSSPP HQEVNNKKGG AVEVKRSGSG GAFQPFHKEK EERVGGGGAK 180 AIASDDLRPP CSSNSSKKEE KEGQRKQRRC WSQELHKRFL QALQQLGGPD SATPKQIREL 240 MKVDGLTNDE VKSHLQKYRL HTRRPSGIVH NNGNPQTTPF VLVGNIFVQP PEYAAAVATS 300 ADLAPAGIYA PVATHPPPPP PRTAAGSTRR PQLKKSSNHM REDHHHSHSE EDRVNHSNSP 360 ASSSSTHTTT TTSPAY

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MQRLKTMMGS RDYIQALEHE RRKIQVFSKE LPLSLDLVTQ AIEACRQQLS ETTTEYNMNG  60
HNSECSEQTT STDNGPVLEE FIPIKKRPSS PHEEEEDDDD DEQHSHHHRH KISKDNTDKR  120
KSDWLRSVQL WNNPEPSSPP HQEVNNKKGG AVEVKRSGSG GAFQPFHKEK EERVGGGGAK  180
AIASDDLRPP CSSNSSKKEE KEGQRKQRRC WSQELHKRFL QALQQLGGPD SATPKQIREL  240
MKVDGLTNDE VKSHLQKYRL HTRRPSGIVH NNGNPQTTPF VLVGNIFVQP PEYAAAVATS  300
ADLAPAGIYA PVATHPPPPP PRTAAGSTRR PQLKKSSNHM REDHHHSHSE EDRVNHSNSP  360
ASSSSTHTTT TTSPAY

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.VL6YY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016176846.1	0.0	transcription factor HRS1
Refseq	XP_025677034.1	0.0	transcription factor HRS1
Swissprot	Q9FPE8	7e-85	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A444XS19	0.0	A0A444XS19_ARAHY; Uncharacterized protein
STRING	XP_007143802.1	1e-140	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3918	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	2e-74	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]