PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.VK5KG
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 407aa    MW: 44873.4 Da    PI: 9.5431
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.VK5KGgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-056787323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C++Cgk F r  nL+ H r H
  Araip.VK5KG 67 CEICGKGFQRDQNLQLHRRGH 87
                 *******************88 PP
2zf-C2H212.50.00046142164123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H +t+
  Araip.VK5KG 142 WKCDKCSKKYAVQSDWKAHSKTC 164
                  58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.4E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.6E-86487No hitNo description
SMARTSM003550.0766587IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4896587IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM0035579107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.6E-8137162No hitNo description
SMARTSM00355150142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MLQQHKKQAL AGVVIQENMS NFTPPPPSQT HGQVNKKKRS LPGNPDPDAE VIALSPKTLM  60
ATNRFLCEIC GKGFQRDQNL QLHRRGHNLP WKLKQRTKTE VVRKKVYVCP EPTCVHHDPG  120
RALGDLTGIK KHFSRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  180
DSFITHRAFC DALAEESARA VTAVSQSQSH EIHGFSLKQE QQSSFSTMTP WLDFSSVTTT  240
TTTPRLDLDE QVPNRNPNPS GVIGPTAHMS ATALLQKAAQ MGATTTTTTV SSSAQHSQSQ  300
LIRTHPQGHV SDTFGLNLSS RDDPTAFAHH GFFPPPASSP SLLHHVINSF DDAFGANDGA  360
GEGMTRDFLG LRPLSHSDIL TIAGISNCIN STSSSSPHHH HQKPWQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-36138199364Zinc finger protein JACKDAW
5b3h_F9e-36138199364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193104KQRTKTEVVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.VK5KG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016169850.10.0protein indeterminate-domain 11
RefseqXP_025670759.10.0protein indeterminate-domain 11 isoform X2
SwissprotQ8H1F51e-124IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A445BV150.0A0A445BV15_ARAHY; Uncharacterized protein
STRINGGLYMA15G02840.11e-155(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-104indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]