PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.VH3UM | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 273aa MW: 30745.6 Da PI: 7.373 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40 | 9.2e-13 | 17 | 61 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky Araip.VH3UM 17 RENWTEPEHDKFLEALQLFDRD-WKKIGAFVG-SKTVIQIRSHAQKY 61 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-16 | 11 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.768 | 12 | 66 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.4E-17 | 15 | 64 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.1E-10 | 16 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-5 | 16 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-10 | 17 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.32E-8 | 19 | 62 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
EDAAKKIRKP YTITKSRENW TEPEHDKFLE ALQLFDRDWK KIGAFVGSKT VIQIRSHAQK 60 YFIKVQKSGT SEHLPPPRPK RKAAHPYPQK ASKNAPLLSQ LSESFQSSSA LLESGYVLKH 120 DPSTMLKTPI MNTVVPSWSN STLQTTNLLH VPKVNDPSGS SESTPRVQPG DESNGQGNSS 180 FPLRVLPDFT QVYSFIGSVF DPNTTDHLHK LKNMDRIDVE TVLLLMRNLS VNLTSPDFED 240 HRKVLSTYEV ELDTDDYINA DILQDDQLKS AAT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.VH3UM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF208681 | 0.0 | KF208681.1 Arachis hypogaea putative MYB-related protein 27 (MYB27) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016204322.1 | 0.0 | protein REVEILLE 6 | ||||
Refseq | XP_025656927.1 | 0.0 | protein REVEILLE 6 | ||||
Swissprot | Q8H0W3 | 1e-106 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | V5T718 | 0.0 | V5T718_ARAHY; Putative MYB-related protein 27 | ||||
STRING | XP_004516868.1 | 1e-156 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1119 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 3e-89 | MYB_related family protein |
Publications ? help Back to Top | |||
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