PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.VC558
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Nin-like
Protein Properties Length: 329aa    MW: 37987.6 Da    PI: 6.6739
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.VC558genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK79.82.8e-25205254352
       RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  ++i l dl kyF+ pi +A+++L+++lTvLKr+CR++GI+RWPhRkiksl
  Araip.VC558 205 AKIALPDLVKYFDVPIVEASRNLNIGLTVLKRKCREFGIPRWPHRKIKSL 254
                  7899********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.963189274IPR003035RWP-RK domain
PfamPF020422.2E-20207254IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDSSLSILLV FNNTIQPELF RSVHVYCREL LDGDEREEEE VVVEREFVLS ESGFYVEMKC  60
TPILTSLKLC VDDVCEGYKN GVWLCVFAFH ADHTPQFTHI PSILLFARNS KLKAIPNLLN  120
DLQIIYKLEL KAEVKDDLPD SSKEESQGNS DGHQSPQKVL PVFNQDLNCL PLDEDTTELI  180
DKKTNVESLP GFGAKKRRAQ SDHIAKIALP DLVKYFDVPI VEASRNLNIG LTVLKRKCRE  240
FGIPRWPHRK IKSLDNLIHD LEEEAKHQEP KDKVAAMAMV RRQRMLECEK ENMEKKPFMD  300
IQTETKRFRQ DVFKRRHRAR AVEKQSSAV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.VC558
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150432e-50AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020978502.10.0protein RKD5
TrEMBLA0A444WUW30.0A0A444WUW3_ARAHY; Uncharacterized protein
STRINGAES953081e-159(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96463042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.11e-82RWP-RK domain-containing protein