PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.VC3KW

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 273aa MW: 30873.2 Da PI: 4.6107

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.VC3KW	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.9	6.8e-08	116	216	1	71
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............................tekerrtraetrtgCkaklk 67 +fYn YAk+ G+ r+++ + + +n+e t+r fvC +eg+r+ ++ +++ r+++++ t +a++k Araip.VC3KW 116 SFYNLYAKMNGYAARRNRLRWN-MNNEPTQRSFVCFREGFRRVSEMPnclvlprwsknaraqgdggasclgfggfygsDTSGMREESVQCTALQAEMK 212 5***************9998.6666************988776677777766666666666666666666655444444444455555555555 PP FAR1 68 vkke 71 k + Araip.VC3KW 213 GKHN 216 5555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.7E-6	116	222	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MPKEMGGSGN MVVEGESESP KASLEEEESV THYEHCASVT EENEVGYFSD SSGNELLGGD 60 LGNEADSHEL CGEQFYDNWE ARAVDGIVDI GSINFKEVTV DVLKRLHFPD LEVAISFYNL 120 YAKMNGYAAR RNRLRWNMNN EPTQRSFVCF REGFRRVSEM PNCLVLPRWS KNARAQGDGG 180 ASCLGFGGFY GSDTSGMREE SVQCTALQAE MKGKHNHFGM WRSQEDLLYA ENDDCDERGY 240 NKEAPSNKVI TREEWENKLN DVKIRKLQIC KVQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.VC3KW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3613	6	39