PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.V8XWP | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 421aa MW: 46678.4 Da PI: 10.3009 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.7 | 3.8e-07 | 319 | 358 | 6 | 50 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 + E++RR+++N ++ Lr+l P++ +K++ a ++ A+eY Araip.V8XWP 319 FATEKQRREQLNGKYKILRSLFPSP-----TKMDRAFVVGDAIEY 358 689*********************9.....899999999999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48592 | 2.49E-37 | 33 | 154 | No hit | No description |
Gene3D | G3DSA:1.10.560.10 | 2.1E-35 | 34 | 160 | IPR027413 | GroEL-like equatorial domain |
Pfam | PF00118 | 4.7E-22 | 53 | 171 | IPR002423 | Chaperonin Cpn60/TCP-1 family |
PRINTS | PR00304 | 7.1E-14 | 70 | 88 | IPR017998 | Chaperone tailless complex polypeptide 1 (TCP-1) |
PRINTS | PR00304 | 7.1E-14 | 104 | 123 | IPR017998 | Chaperone tailless complex polypeptide 1 (TCP-1) |
Gene3D | G3DSA:2.60.120.200 | 6.1E-6 | 191 | 267 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
SuperFamily | SSF56112 | 2.08E-9 | 250 | 319 | IPR011009 | Protein kinase-like domain |
Gene3D | G3DSA:3.30.200.20 | 1.2E-10 | 268 | 319 | No hit | No description |
PROSITE profile | PS50888 | 11.242 | 313 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.29E-8 | 315 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-4 | 319 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-5 | 320 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.08E-4 | 322 | 358 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MYRLASKLAS SITSSTSWSV IHCVVISSRN YTSKDINFGV GARATILQSV TKVANAVKVT 60 MGPKKSYRNP RITNDGVTVA KSIKFQDKAK NIGADLVKQV AKATNTAVGD GTTCATVLSQ 120 AILTEGCKSI AAGVNVMDLR NGINKAVDAV ITDLKSRAVM ISTPEEITQI ILEIMFVEQL 180 ELLLWLKKKI KMHSNNGRKV KIGVGVGVSV GVLCGLLLAF CLIWKRRKMA TLKETNAALK 240 DQSKKEQEED PEVPLYDLSV IASSTNNFSH KNKLGEGTLE NGQRIAVKRL SASSGQEIKE 300 FKNEIALIAK LQHRNLLNFA TEKQRREQLN GKYKILRSLF PSPTKMDRAF VVGDAIEYSN 360 GIYRIGLTHY SEGSTCLIFI PFIKWFKILI NTIIDNLEQR FYKNLRNENL ASENVVLCIY 420 K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4pj1_A | 1e-36 | 32 | 170 | 28 | 173 | 60 kDa heat shock protein, mitochondrial |
4pj1_B | 1e-36 | 32 | 170 | 28 | 173 | 60 kDa heat shock protein, mitochondrial |
4pj1_C | 1e-36 | 32 | 170 | 28 | 173 | 60 kDa heat shock protein, mitochondrial |
4pj1_D | 1e-36 | 32 | 170 | 28 | 173 | 60 kDa heat shock protein, mitochondrial |
4pj1_E | 1e-36 | 32 | 170 | 28 | 173 | 60 kDa heat shock protein, mitochondrial |
4pj1_F | 1e-36 | 32 | 170 | 28 | 173 | 60 kDa heat shock protein, mitochondrial |
4pj1_G | 1e-36 | 32 | 170 | 28 | 173 | 60 kDa heat shock protein, mitochondrial |
4pj1_H | 1e-36 | 32 | 170 | 28 | 173 | 60 kDa heat shock protein, mitochondrial |
4pj1_I | 1e-36 | 32 | 170 | 28 | 173 | 60 kDa heat shock protein, mitochondrial |
4pj1_J | 1e-36 | 32 | 170 | 28 | 173 | 60 kDa heat shock protein, mitochondrial |
4pj1_K | 1e-36 | 32 | 170 | 28 | 173 | 60 kDa heat shock protein, mitochondrial |
4pj1_L | 1e-36 | 32 | 170 | 28 | 173 | 60 kDa heat shock protein, mitochondrial |
4pj1_M | 1e-36 | 32 | 170 | 28 | 173 | 60 kDa heat shock protein, mitochondrial |
4pj1_N | 1e-36 | 32 | 170 | 28 | 173 | 60 kDa heat shock protein, mitochondrial |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.V8XWP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC140915 | 6e-48 | AC140915.6 Medicago truncatula chromosome 8 clone mth2-10l24 map 9.500cM, complete sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31210.1 | 2e-08 | bHLH family protein |