PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.V2WCU | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 164aa MW: 19167.3 Da PI: 4.9501 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 40.7 | 7.9e-13 | 75 | 145 | 1 | 71 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkke 71 +fY +YAk GF rk+ ++ + ng+i +r++vC+k g+r ++ k ++ +r++ra tr++C+a+++ ++ Araip.V2WCU 75 EFYAKYAKCYGFVSRKDLKTV-DANGNINTRQLVCNKAGERYWKHLKrDNWQREHRAITRVNCRARIRFIRH 145 6***********998886555.69999*************98777664688999************997665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.4E-11 | 75 | 144 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MENDGKESYK DGDQSEDLSV EYECSSDESN DMVDVTVDEA EAYIINADGF EKLITDLTIE 60 DIWGLVFDTE SQVCEFYAKY AKCYGFVSRK DLKTVDANGN INTRQLVCNK AGERYWKHLK 120 RDNWQREHRA ITRVNCRARI RFIRHYRTGY LRLVDYRAPT SFGS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.V2WCU |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020967687.1 | 1e-107 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A445A6K6 | 1e-92 | A0A445A6K6_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15352 | 2 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 2e-09 | FAR1 family protein |