PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.V1VB7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 238aa MW: 26579.1 Da PI: 8.5267 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.8 | 3.9e-13 | 64 | 110 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+E+rRR+riNs +++Lr+llP + K +Ka+ L k+v+ +k+L Araip.V1VB7 64 RNHKEAEKRRRERINSHLARLRTLLPCN-----SKTDKASLLAKVVQRVKEL 110 58*************************8.....7************999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.663 | 61 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.80E-10 | 64 | 113 | No hit | No description |
Pfam | PF00010 | 1.2E-10 | 64 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-14 | 65 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-15 | 65 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-11 | 67 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 2.0E-4 | 149 | 204 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MDHNNSDLFQ LLGAGAGGGY YPAAAMLMMD HHHQHQVSSD DNMSAIETQA SHHQQQDRAL 60 AALRNHKEAE KRRRERINSH LARLRTLLPC NSKTDKASLL AKVVQRVKEL KQQTSEIITE 120 FETLPSETDE ISVLSTADGG HGGLIFKASL CCEDRSDLIP ELIEILKSLH LKTLRAEMAT 180 LGGRTRNVLV VAADKEHNSI ESIHFLQNSL RSLLERSGSA DRSKRRRAMD RRFTPASS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.V1VB7 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016182383.1 | 1e-175 | transcription factor bHLH106 | ||||
Refseq | XP_025684182.1 | 1e-175 | transcription factor bHLH106 | ||||
Swissprot | Q9LET0 | 1e-74 | BH107_ARATH; Putative transcription factor bHLH107 | ||||
TrEMBL | A0A444X965 | 1e-174 | A0A444X965_ARAHY; Uncharacterized protein | ||||
STRING | AES81173 | 1e-101 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6672 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 2e-76 | bHLH family protein |
Publications ? help Back to Top | |||
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