PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.UR33Y | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 169aa MW: 18689.5 Da PI: 6.5054 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.3 | 1.8e-15 | 51 | 141 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f vl++s+v +s+++ p k + ++ + e t+ g+sW++ ++ +gr ++ +GW++Fvkan L egD +vF+l+ +s+++ v+ v Araip.UR33Y 51 FHVVLSKSHVRRSCLMG-PSKDLVDIlP-SA-E--VPTVLKCGGESWDMVYR-GHAPGRKFFDGGWRKFVKANCLVEGDACVFELMANSDEKIVFEV 141 66788899999998555.8888878842.22.2..34777889********3.45566799*************************99888777654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-18 | 46 | 145 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.26E-17 | 46 | 145 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.09E-17 | 49 | 145 | No hit | No description |
PROSITE profile | PS50863 | 12.041 | 50 | 147 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-9 | 51 | 147 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.7E-14 | 51 | 140 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MKLCMQHLNL TSTNSNFAVS VEEQAPLPKP ADPAANLSSD EIAPLSGNPF FHVVLSKSHV 60 RRSCLMGPSK DLVDILPSAE VPTVLKCGGE SWDMVYRGHA PGRKFFDGGW RKFVKANCLV 120 EGDACVFELM ANSDEKIVFE VQILRGDVPK VFFKRDRIGE SEQKPIVID |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.UR33Y |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020971676.1 | 1e-108 | B3 domain-containing protein Os04g0386900-like | ||||
Refseq | XP_025633334.1 | 1e-108 | B3 domain-containing protein Os04g0386900 | ||||
TrEMBL | A0A445ECS2 | 1e-120 | A0A445ECS2_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA07G35040.3 | 8e-43 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9722 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 1e-11 | related to vernalization1 1 |