PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.UP4N0
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 311aa    MW: 34173.9 Da    PI: 6.4502
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.UP4N0genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.21.5e-15233269135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  Araip.UP4N0 233 CRHCGISEkcTPMMRRGPEGPRTLCNACGLMWANKGT 269
                  **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.6E-1090125IPR010399Tify domain
PROSITE profilePS5132014.22790125IPR010399Tify domain
PfamPF062002.4E-1296124IPR010399Tify domain
PROSITE profilePS5101713.245158200IPR010402CCT domain
PfamPF062033.6E-16158200IPR010402CCT domain
SMARTSM004011.9E-13227280IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.84227285IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-13229291No hitNo description
Gene3DG3DSA:3.30.50.105.5E-15231274IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.85E-13232274No hitNo description
PROSITE patternPS003440233260IPR000679Zinc finger, GATA-type
PfamPF003201.9E-13233269IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
TVVLAFCAMD GIHGGDSRIH MSEGQHPMHV PYVQEHEHHG LHHMSNGNGM EDDQNNGDDT  60
NCGGSESVEG EIPSNHGNLP ENHTAMIDQG GDVGDQLTLS FQGQVYVFDS VSPEKVQAVL  120
LLLGGREVPP TMPAMPILPH QSNQGFTGTP QKFSVPQRLA SLLRFREKRK ERNFDKKIRY  180
TVRKEVALRM QRNKGQFTSS KPNHDESASG AANWGANESW SSDNNGSQQD IVCRHCGISE  240
KCTPMMRRGP EGPRTLCNAC GLMWANKGTL RDLSRAASMA GHNSQLNKNE NKDFEANQMV  300
QTVAADVEDS S
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.UP4N0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016176296.10.0GATA transcription factor 28 isoform X2
RefseqXP_025676158.10.0GATA transcription factor 28 isoform X2
RefseqXP_025676159.10.0GATA transcription factor 28 isoform X2
SwissprotQ8H1G01e-134GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A445BQR30.0A0A445BQR3_ARAHY; Uncharacterized protein
STRINGGLYMA08G23720.20.0(Glycine max)
STRINGXP_007142122.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136512325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-137ZIM-LIKE 2