PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.UB7JK

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 457aa MW: 50321.4 Da PI: 7.8612

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.UB7JK	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	108	130	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp Cg sF++ ++ H t+ Araip.UB7JK 108 YECPVCGNSFRSEDEVSEHVDTC 130 99****************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.10.20.90	6.8E-10	24	52	No hit	No description
PROSITE profile	PS50157	10.492	108	138	IPR007087	Zinc finger, C2H2
CDD	cd09212	1.29E-18	163	252	No hit	No description
SuperFamily	SSF143503	5.75E-17	165	253	IPR018997	PUB domain
Pfam	PF09409	5.4E-16	168	243	IPR018997	PUB domain
SMART	SM00580	7.7E-15	169	236	IPR018997	PUB domain
SuperFamily	SSF54236	5.17E-14	317	430	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	6.8E-10	334	428	No hit	No description
Pfam	PF00789	2.3E-5	346	426	IPR001012	UBX domain
PROSITE profile	PS50033	11.785	346	430	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MDDVKDKMKG FMKKVNNSFT SSSSAKFKGQ GRVLGSSSSP SPPPYATANS TSTPRPRPLN 60 SNPTPPPHKA TASSGERDRK PPTSGFDPFD SFVTSSKRSQ NGYSLNVYEC PVCGNSFRSE 120 DEVSEHVDTC LSNNGERADV SQLPDTGADS NAELEVCVGT YVSGKPSHGS IDILLKLLKN 180 VVREPENAKF RKIRLGNPKI KEAVAEVIGG TELICFLGFE LKDENGETWA VMELPSEEQI 240 RLIKKATLLL ESQLVLQVSP KSENLAAASA DNIDAKPESK PIDRQVKVFF AVPETVAAKI 300 ELPDSFYKLS VEEVRREAEL RRKKIEESQL LIPKSLKEKQ AKAAKKRYTK AIIRVQFPDG 360 VVLQGVFSPW EPTMALYEFV SSALKQPGLE FELMHPVVVR RQAIPRFAKA GENSKTLEDE 420 DLVPSALIKF KPLETDSVVF TGLKNELLQI SEPLVNA

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MDDVKDKMKG FMKKVNNSFT SSSSAKFKGQ GRVLGSSSSP SPPPYATANS TSTPRPRPLN  60
SNPTPPPHKA TASSGERDRK PPTSGFDPFD SFVTSSKRSQ NGYSLNVYEC PVCGNSFRSE  120
DEVSEHVDTC LSNNGERADV SQLPDTGADS NAELEVCVGT YVSGKPSHGS IDILLKLLKN  180
VVREPENAKF RKIRLGNPKI KEAVAEVIGG TELICFLGFE LKDENGETWA VMELPSEEQI  240
RLIKKATLLL ESQLVLQVSP KSENLAAASA DNIDAKPESK PIDRQVKVFF AVPETVAAKI  300
ELPDSFYKLS VEEVRREAEL RRKKIEESQL LIPKSLKEKQ AKAAKKRYTK AIIRVQFPDG  360
VVLQGVFSPW EPTMALYEFV SSALKQPGLE FELMHPVVVR RQAIPRFAKA GENSKTLEDE  420
DLVPSALIKF KPLETDSVVF TGLKNELLQI SEPLVNA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifw_A	6e-16	301	430	23	146	Tether containing UBX domain for GLUT4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.UB7JK

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004536	5e-98	AP004536.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT15N19, TM0097b, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016190862.1	0.0	plant UBX domain-containing protein 2
Refseq	XP_025639180.1	0.0	plant UBX domain-containing protein 2
Swissprot	Q9ZU93	1e-180	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	A0A445DNJ9	0.0	A0A445DNJ9_ARAHY; Uncharacterized protein
STRING	GLYMA08G04760.6	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8944	25	29

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]