PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.U7I8R
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 493aa    MW: 54790.1 Da    PI: 5.1311
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.U7I8RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.86.6e-37121042103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sws+n+nsfvv++  efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F kg+k+ll++i 
   Araip.U7I8R  12 FLSKTYDMVDDSSTDSVVSWSDNSNSFVVWNVPEFASRILPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLKGQKQLLKSIS 99 
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   Araip.U7I8R 100 RRKTS 104
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.0E-38596IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.7E-598101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.18E-348101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3112101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-201235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-205062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MASANVNGVA PFLSKTYDMV DDSSTDSVVS WSDNSNSFVV WNVPEFASRI LPKYFKHNNF  60
SSFVRQLNTY GFRKVDPDRW EFANEGFLKG QKQLLKSISR RKTSHVNGST QQPSQVQNTP  120
VGGACVEVGK FGIEEEIERL KRDKNVLMQE LVRLRQQQQT TDNQLQTVGQ RVQVMEQRQQ  180
QMMSFLAKAM HSPGFLAQFV QQNESNRHIT GGNKKRRLHR QDEDSLANKH LHNSLDGRVV  240
KYQPSINEAA KSLLCQILQM NNSTRMDSSI KSPDAFLIDD VPTAIPLDSS SSSTRVSGVT  300
LSEVPHPQTS GQSYVPIEPQ FPVSRMTSSR SEVQSSPAVF PDCVKAAEFP ELNAQKCQDS  360
VLDFGKVQGI GTESSFMNPD LSFVGSDTAN MEDLEMISTV LDGTESIEAN AFSPDADGVS  420
KLPGIGDEFW ELFLRPSPLT GDTDEVKCNS LGCDFTGDQE LSSEKEIQQE NAADKKQHMD  480
HLTQQMGLLA SKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-25410412123Heat shock factor protein 1
5d5u_B1e-25210319131Heat shock factor protein 1
5d5v_B1e-25210319131Heat shock factor protein 1
5d5v_D1e-25210319131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.U7I8R
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187807.10.0heat stress transcription factor A-1b
RefseqXP_016187808.10.0heat stress transcription factor A-1b
RefseqXP_020973815.10.0heat stress transcription factor A-1b
RefseqXP_025642830.10.0heat stress transcription factor A-1b
RefseqXP_025642831.10.0heat stress transcription factor A-1b
SwissprotQ84T611e-154HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A445A7870.0A0A445A787_ARAHY; Uncharacterized protein
STRINGAES896300.0(Medicago truncatula)
STRINGAES896390.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-107heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]