PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.U4S4B
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Trihelix
Protein Properties Length: 293aa    MW: 32787.8 Da    PI: 10.1707
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.U4S4BgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.83.8e-151104186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..................rergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                  +W ++ + +Li+a  ++  +l+rg+l++++W+ev++++                    +  +r+ +qCk++++ l+k+yk +k++ ++     +s +p
  Araip.U4S4B   1 CWNEEATFTLIDAWGDRYLELNRGNLRQKHWQEVADAVnelhagdggavlggtsttTTKRTRRTDVQCKNRIDTLKKKYKIEKARVSESGGSYQSPWP 98 
                  7******************************************************999999**********************9988876677779** PP

     trihelix  81 yfdqle 86 
                  +f++l+
  Araip.U4S4B  99 FFSRLD 104
                  ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-241106No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
CWNEEATFTL IDAWGDRYLE LNRGNLRQKH WQEVADAVNE LHAGDGGAVL GGTSTTTTKR  60
TRRTDVQCKN RIDTLKKKYK IEKARVSESG GSYQSPWPFF SRLDNLIGDT FPVKKLSPPA  120
TGRGTPPSAA KLSPLPPPAW IISHPVGPRS GTQKRTAAVP TTAPANREDS YFRRNFSAFA  180
AAAAAAAEAK SGDSDGWRSS SDGGDGGGRR RKTGEIEMKC WEVGYRELAQ AIEKFGEIYE  240
RVEASKQRQM VELEKQRMQF AKDLEYQRMQ LFMETQVQFQ KIKRAKRTSD SFS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.U4S4B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193329.10.0trihelix transcription factor ASIL2
RefseqXP_025643625.10.0trihelix transcription factor ASIL2
TrEMBLA0A445A4L60.0A0A445A4L6_ARAHY; Uncharacterized protein
STRINGXP_004505493.11e-118(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.17e-72sequence-specific DNA binding transcription factors