PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.U0W6U
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CO-like
Protein Properties Length: 415aa    MW: 45040.1 Da    PI: 4.9017
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.U0W6UgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.44.5e-06544639
     zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                 C+ ++e++   +C+++   lC +C  + H+       H++
  Araip.U0W6U  5 CDFCGEQRSLVYCRSDAASLCLSCDRNVHSAnalskrHSR 44
                 *****************************65667777765 PP
2zf-B_box21.93.6e-074689441
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                  +C++++++++ + C + +  lC++C   +H g       H++++
  Araip.U0W6U 46 LVCERCNSQPAFIRCAEEKISLCQNCDWLGH-GttastsgHKRQT 89
                 68*****************************.5588888888776 PP
3CCT60.74.7e-21358401144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R  a++RYkeK+ktRkFeK++rY+sRKa+A+ R RvKGrFvk+ 
  Araip.U0W6U 358 RSTAVMRYKEKKKTRKFEKRVRYASRKARADVRRRVKGRFVKAG 401
                  8899*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.499147IPR000315B-box-type zinc finger
CDDcd000214.73E-8447No hitNo description
SMARTSM003367.1E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.0864390IPR000315B-box-type zinc finger
CDDcd000211.75E-44790No hitNo description
SMARTSM0033624890IPR000315B-box-type zinc finger
PfamPF062031.1E-15358400IPR010402CCT domain
PROSITE profilePS5101715.348358400IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGYLCDFCGE QRSLVYCRSD AASLCLSCDR NVHSANALSK RHSRTLVCER CNSQPAFIRC  60
AEEKISLCQN CDWLGHGTTA STSGHKRQTI NLYSGCPSAA EFSSIWSFFS DIPAMGETCE  120
QELGLMSISE NSEKSAWVPP ENQNASSSAQ ATNLPGKDKS WVGTSTMPES SSEPRIMDQP  180
PGPSNACVPK LYCPVKTTPA LCEDDDNLYD DFNMDEVDLD LENYEELFGV ALSHSEELFE  240
NGGIDSLFGT KEMSASAGDS NCQGAVAAEG STGLINATQP ACSNAASADS MMSTKTEPII  300
CFTGRQSQSN ISFSGATKDG GGGGGGDYQD CGASSMLLMG EPPWCPPCPE SSMQSANRST  360
AVMRYKEKKK TRKFEKRVRY ASRKARADVR RRVKGRFVKA GDIYDYDPMS QTRSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.U0W6U
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016166580.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_016166581.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_016166582.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_016166583.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9LUA91e-144COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A444YAS00.0A0A444YAS0_ARAHY; Uncharacterized protein
STRINGGLYMA20G07051.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-110B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]