PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.TXC1J | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 154aa MW: 17465.4 Da PI: 6.9109 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.8 | 2.4e-20 | 30 | 85 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rr +++t++q+ Lee+F+ + +p+ ++r++L ++lgL+ rqVk+WFqNrR++ k Araip.TXC1J 30 RRFYHRHTPHQIAKLEEAFNACAHPNDSMRRQLGTELGLEPRQVKFWFQNRRTQAK 85 5777899**********************************************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.01E-19 | 10 | 86 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 16 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.293 | 27 | 87 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-17 | 29 | 91 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.1E-18 | 30 | 85 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.51E-16 | 30 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 154 aa Download sequence Send to blast |
MASPMGSSST AGGATDGTDD EGQNRPQNSR RFYHRHTPHQ IAKLEEAFNA CAHPNDSMRR 60 QLGTELGLEP RQVKFWFQNR RTQAKAQADR SNNCALRREN ERMMAENLMF RESLKNVVCV 120 TCGGPTVTED DCQIRLEQFK LENDFLVQEA STSN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.TXC1J |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020973143.1 | 1e-113 | homeobox-leucine zipper protein ROC3-like | ||||
Refseq | XP_025640949.1 | 1e-114 | homeobox-leucine zipper protein ROC8-like | ||||
Swissprot | Q69T58 | 3e-41 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | A0A444ZSS1 | 2e-90 | A0A444ZSS1_ARAHY; Uncharacterized protein | ||||
STRING | XP_008348615.1 | 3e-43 | (Malus domestica) | ||||
STRING | XP_008358175.1 | 3e-43 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21159 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G17920.1 | 2e-32 | homeodomain GLABROUS 12 |