PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.TU4HL
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TCP
Protein Properties Length: 389aa    MW: 42877.3 Da    PI: 9.4294
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.TU4HLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1571.1e-48452091137
          TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaessss 80 
                  +a+kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t+eWLl+++k+aikel+++                  sss            
  Araip.TU4HL  45 PAPKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLLTKSKRAIKELARSknsssgnnnggvannnsfSSS------------ 130
                  589**************************************************************444433333333333221111............ PP

          TCP  81 sasnsssg.............................kaaksaakskksqksaasalnlakesrakarararertrekmriknkln 137
                         +                                + +   +++q+++++ ++++kesr+karararert++km++++k +
  Araip.TU4HL 131 -------SsdgvdddevdsvinqqqltdnidgtheqgGVDSLERRLRRDQQKDEESRAKMKESREKARARARERTSSKMCNSEKVQ 209
                  .......1112333344444445555566888888864444444666666777777*************************98866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-4447204IPR005333Transcription factor, TCP
PROSITE profilePS5136936.32448106IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.188184201IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MTNLAVADAM FKQEYFTAGG GGGGGGSSHH HHHHYGMSSL ITKRPAPKKD RHSKIHTSQG  60
LRDRRVRLSI EIARKFFDLQ DMLGFDKASN TLEWLLTKSK RAIKELARSK NSSSGNNNGG  120
VANNNSFSSS SSDGVDDDEV DSVINQQQLT DNIDGTHEQG GVDSLERRLR RDQQKDEESR  180
AKMKESREKA RARARERTSS KMCNSEKVQE LKKKSPAMVM EEDPQILMQH QQLRAPMIQP  240
LEESSMRSSP KLFQPHHLAA AGGGGGGGGG GGGGSSEVPR DDFNVIEESI VIRRKLKQSL  300
MSSSSSSSNN HHHQNHNVIP KEATNFNNNN SNNSDYHCFP NLSSPNWESN ASAATNNGRS  360
NVCTISSMNL STRLQIFGKS WEECTNPHL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.TU4HL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2258427e-57AY225842.1 Machaerium scleroxylon isolate 2 LEGCYC gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016196301.10.0transcription factor DICHOTOMA-like
TrEMBLA0A444WNB90.0A0A444WNB9_ARAHY; Uncharacterized protein
STRINGXP_007151756.11e-105(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.25e-27TCP family protein