PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.TKX33 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 434aa MW: 47960.5 Da PI: 7.7732 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.5 | 1.2e-05 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Araip.TKX33 6 FVCEICNKGFQRDQNLQLHRRGH 28 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.8 | 4.1e-05 | 82 | 104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H++t+ Araip.TKX33 82 WKCDKCSKRYAVQSDWKAHLKTC 104 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.44E-8 | 5 | 28 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 5 | 28 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 6.7E-5 | 6 | 28 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.949 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 82 | 47 | 77 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 70 | 103 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.44E-8 | 77 | 102 | No hit | No description |
SMART | SM00355 | 81 | 82 | 102 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTTT EVKKRVYVCP EPTCVHHNPS 60 RALGDLTGIK KHFSRKHGEK KWKCDKCSKR YAVQSDWKAH LKTCGTREYK CDCGTIFSRR 120 DSFITHRAFC DALTEENNKL SSTHHQCLLT TGMPPSQIPL TTSSSSSDQL FITDPPLIIP 180 TTTPFNNSIF SSTTTSSCSS STLQLSSTGF NNVILSSNPS SSSPHMSATA LLQKAAQMGA 240 TASNNSMNYS PMMQKSFSMG TTTMAGVSAG HDAAFTNQLF QKEIVSQLFD ANTTTNSSSN 300 NDMGMYGQMF MGTITTEHSN NNNNNGLMKI SSDVEQEISD DDNNNNNTIM VEASRFGGGS 360 GRDDDIATVH DFLGIGGASM ASTATVSLHE SEQQQRLVAV ETLNQQRLQI MNHFHHHIPH 420 HAADSAIDKT MWDV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-36 | 78 | 142 | 3 | 67 | Zinc finger protein JACKDAW |
5b3h_F | 3e-36 | 78 | 142 | 3 | 67 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.TKX33 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020982077.1 | 0.0 | protein indeterminate-domain 2-like | ||||
Swissprot | Q9SCQ6 | 2e-99 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A444YID9 | 0.0 | A0A444YID9_ARAHY; Uncharacterized protein | ||||
STRING | XP_007163889.1 | 1e-157 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2192 | 30 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-94 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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