PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.TE0TX
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TALE
Protein Properties Length: 272aa    MW: 30935 Da    PI: 5.4608
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.TE0TXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.14e-102152492155
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  k +yp+++++ eLAk++gL+++q+ +WF N+R ++
  Araip.TE0TX 215 KWPYPTEADKIELAKSTGLDQKQINNWFINQRKRH 249
                  579*****************************885 PP
2ELK32.22.4e-11169190122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK++LlrK+++++g+Lk EFs
  Araip.TE0TX 169 ELKDRLLRKFGSHIGTLKLEFS 190
                  9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.2E-242872IPR005540KNOX1
PfamPF037901.8E-233071IPR005540KNOX1
SMARTSM012564.1E-2679130IPR005541KNOX2
PfamPF037911.2E-2483129IPR005541KNOX2
PROSITE profilePS512139.83169189IPR005539ELK domain
PfamPF037893.0E-8169190IPR005539ELK domain
SMARTSM011886.5E-6169190IPR005539ELK domain
PROSITE profilePS5007113.281189252IPR001356Homeobox domain
SuperFamilySSF466894.71E-20190261IPR009057Homeodomain-like
SMARTSM003892.3E-14191256IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-28194253IPR009057Homeodomain-like
CDDcd000861.16E-13201253No hitNo description
PfamPF059203.0E-18209248IPR008422Homeobox KN domain
PROSITE patternPS000270227250IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MLGSDELLSA AGIQQQQPPH NNEAMASTMM KAKIASHPHY PRLLQAYIDC QKVGAPPEIA  60
CLLEEIRREN DLFKRDDVVS TCFGADPELD EFMETYCELL VKYKSDLARP FDEATSFLNK  120
IEMQLSNLCC NGASVPTLSD DGAVSSEEDF SAGDGDGGQD GQSRGEDREL KDRLLRKFGS  180
HIGTLKLEFS KKKKKGKLPK EARQTLLQWW NVHYKWPYPT EADKIELAKS TGLDQKQINN  240
WFINQRKRHW KPSENMQFSM MENLGGRFLP DE
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00670PBMTransfer from GRMZM2G087741Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.TE0TX
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016202430.10.0homeobox protein knotted-1-like 6 isoform X2
RefseqXP_025654240.10.0homeobox protein knotted-1-like 6 isoform X2
SwissprotQ84JS61e-136KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A444Z6Z30.0A0A444Z6Z3_ARAHY; Uncharacterized protein
STRINGXP_007157365.11e-155(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-124KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]