PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.T98BR
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 514aa    MW: 56235.4 Da    PI: 4.6634
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.T98BRgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.31.9e-36441352102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++ ++sws+++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i 
   Araip.T98BR  44 FLSKTYDMVDDPSTDAIVSWSATNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLRNIT 131
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Araip.T98BR 132 RRKP 135
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.12E-3639133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-6540133IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.2E-4041133IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.5E-204467IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3244133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-208294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-2095107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
DLLIHISKGM DASTSGADGG GGGSTNGATP APVPIPNANA PPPFLSKTYD MVDDPSTDAI  60
VSWSATNNSF VVWNPPEFAR DLLPKYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL  120
RGQKHLLRNI TRRKPAHGHN HQQSQQSHVQ NSSVGACVEV GKFGLEEEVE RLKRDKNVLM  180
QELVRLKQQQ QTTDGQLQTM VQRLQGMEQR QQQMMSFLAK AVQSPGFFAQ FVQQQNENNR  240
RISEVNKKRR LKQEGIAETD CAAAPDGQIV KYQPLINDSA KAMLRQIMKW DTSRAESFSN  300
NPDNYLIGDG SSSSSGAMDS GSSSSWTSGV TLQEVPPTSV QSSHVPITLG APGHVPSASK  360
PEIQSLPQAG APEKVTRVGA SDIPSIHVPQ ADVIMPDLAP IDEIESGSML GIPEDNYMAP  420
EAGDEGFMDP DSLGVSGSFP IDFEGISPDA DLDDFLGNPS IWDELLQTPV QEDTETDIEA  480
SKVNEVQPAE NGWDKTQHLD QLTKQMGHLS SEAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-29211334129Heat shock factor protein 1
5d5v_B5e-29211334129Heat shock factor protein 1
5d5v_D5e-29211334129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245252NKKRRLKQ
2246251KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.T98BR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020978414.10.0heat shock factor protein HSF8 isoform X1
SwissprotQ401521e-173HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A1S2YZS60.0A0A1S2YZS6_CICAR; heat shock factor protein HSF8
STRINGXP_004512501.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-120heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]