PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.T8DVZ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 234aa MW: 26330.2 Da PI: 9.1038 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.9e-05 | 208 | 231 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+dC++ F++ + L++H + H Araip.T8DVZ 208 YGCKDCNRLFKTEDALNSHNKAkH 231 67*****************88766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.365 | 208 | 234 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.9E-6 | 208 | 232 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 210 | 231 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MGVSSLLDIK LNLLWNLKMK KTLKSSKIFQ LLLPMVRNSE LEVKNAVKLD ANEAKQKEKI 60 GDPRKKEKAN EKDANGEDEE DSFDADSDES DEDSSEDEVF LTHTKRMDHD AHVCLILLLS 120 DVANLIVWHQ RVPLMIPVVA ELSKKRVHES SKKTPVPEKK AKFVTPEKID NKGGVHVATP 180 YPTKQAIKAA ANNRQLVKQQ TPKLVGDYGC KDCNRLFKTE DALNSHNKAK HSAK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 54 | 65 | KQKEKIGDPRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.T8DVZ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016208109.1 | 1e-85 | histone deacetylase HDT1 isoform X3 | ||||
Refseq | XP_025657800.1 | 1e-85 | histone deacetylase HDT1 isoform X2 | ||||
TrEMBL | A0A444YPC6 | 1e-101 | A0A444YPC6_ARAHY; Uncharacterized protein | ||||
STRING | XP_004494141.1 | 2e-40 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1025 | 30 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 1e-21 | histone deacetylase 2C |