PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.T2RLW

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 279aa MW: 32784 Da PI: 10.49

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.T2RLW	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.7	2.5e-10	11	97	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++Y+k + Fs+++++++++ ++i+++ vCs+e + +++ + + +t+ + ++ a++ v k + w ++k++l+H+H+++p Araip.T2RLW 11 KFYKNYSKLADFSTKIRNMTRK--GNKIKNQLIVCSREERWKSKISP---TLKTNLSAGINYPARFYVCILKnIDLWTISKVVLNHSHPCCP 97 6**************99887..7779******998887766...9999********99877769*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-7	11	97	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.815	194	232	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0012	207	234	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MIFKTLEEAG KFYKNYSKLA DFSTKIRNMT RKGNKIKNQL IVCSREERWK SKISPTLKTN 60 LSAGINYPAR FYVCILKNID LWTISKVVLN HSHPCCPNRV EMLKQHRELS KAIRRSAYMD 120 SSLPGSPLLG RDEKHTKVRE LAHIFQQHVY THKKFRKVQG KFREKVNCIT RSMHFTLGFT 180 TYEVVNQVSN STFNKLFVTY DAVSREVKCQ CLLFESRGIL CRHSLSVLSF ERVDNSKNIK 240 RRHTHIKSNQ DEPLLELRSK RFNDLVFWSH NICEFTSES

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.T2RLW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015960283.1	1e-102	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A445AIQ2	1e-137	A0A445AIQ2_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	8e-09	far-red elongated hypocotyls 3