PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.SPH3C

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 154aa MW: 17613.6 Da PI: 10.246

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.SPH3C	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.5	8.1e-17	27	113	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++Y+k +GFs++ +++++ ++i+++ vCs+eg+ +++ + + +t+++ +C ++ v+ +k g w ++k++l+H+H+++p Araip.SPH3C 27 KFYKHYSKLAGFSTKLRNTTRD--GDKIKNQLIVCSREGRWKSKISP---TLKTNPSAGLNCPVRIYVHIMKdVGLWIISKVVLNHSHPFCP 113 6*************987776..8889********9998777...999**************999*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-13	27	113	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MQTSCVVDEK FVPKMGMIFK TLEESRKFYK HYSKLAGFST KLRNTTRDGD KIKNQLIVCS 60 REGRWKSKIS PTLKTNPSAG LNCPVRIYVH IMKDVGLWII SKVVLNHSHP FCPDQAEMLK 120 QHREFSIAVR GSTYMDSGLL GSPLLARDEK HTKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.SPH3C

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016172294.1	4e-79	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_016195668.1	3e-78	protein FAR1-RELATED SEQUENCE 4-like
Refseq	XP_025647866.1	3e-78	protein FAR1-RELATED SEQUENCE 4-like
TrEMBL	A0A444XSH0	6e-89	A0A444XSH0_ARAHY; Uncharacterized protein
TrEMBL	A0A445ABS9	1e-91	A0A445ABS9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	8e-11	FAR1 family protein