PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.SMI4I
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 460aa    MW: 51295.3 Da    PI: 5.5837
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.SMI4IgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.61.4e-311859102
                   HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                   +++d++++ ++sws+++nsfvv+++ efa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i r+k 
   Araip.SMI4I   1 MVDDPSTDPIVSWSATNNSFVVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLRTITRRKP 85 
                   899***********999*****************************************999.........*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.5E-34183IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.5E-28183IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004156.1E-51183IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-31183IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-93244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-94557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MVDDPSTDPI VSWSATNNSF VVWNPPEFAR DLLPKHFKHN NFSSFVRQLN TYGFRKVDPD  60
RWEFANEGFL RGQKHLLRTI TRRKPAHGHS HQQAPQSHGQ SSTVGACVEV GKFGIEEEVE  120
RLKRDKNVLM QELVRLRQQQ QATDSKMQTM AQRLHGMEQR QQQMMSFLAK AVQSPGFFAQ  180
FVQHQSENNR RITEVNKKRR LRPEGISETE PATVPAGQIV KYQPMMNDLA KSMLKQIIKW  240
DASHVDALSK NSDNYLIADD TMTSTWPSGS GVTLQEVPPA SVHSSHTPAA TGTQGHIPSA  300
AIPDIPSLPQ VAAPEKVTKD GSSGAPSIHA SQADVIMPDL PSINETETRS NIQMPEENYR  360
GPEKGDEGYM DPNSLGVGAS FPIDIEGFSP EIDIDDFLSN PSIWDDLLQT PVPVDIEEDV  420
AKESKGNGVE TTENGWDKTQ RMDHLTEQMG LLSSDVQKRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2218336129Heat shock factor protein 1
5d5v_B2e-2218336129Heat shock factor protein 1
5d5v_D2e-2218336129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.SMI4I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201145.10.0heat shock factor protein HSF8
SwissprotQ401521e-151HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A444WVQ90.0A0A444WVQ9_ARAHY; Uncharacterized protein
STRINGXP_004512501.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-145heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]