PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.S7L1T
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 133aa    MW: 14754.2 Da    PI: 9.464
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.S7L1TgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.88.6e-201851134
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                 Cs C+ttkTplWR gp g+k+LCnaCG++yrk++
  Araip.S7L1T 18 CSDCKTTKTPLWRGGPAGPKSLCNACGIRYRKRR 51
                 ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.9E-161262IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-121451No hitNo description
Gene3DG3DSA:3.30.50.101.4E-151651IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034401843IPR000679Zinc finger, GATA-type
PfamPF003201.0E-171851IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.4261848IPR000679Zinc finger, GATA-type
CDDcd002028.30E-131869No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MVMMDLNKEW VCESKKCCSD CKTTKTPLWR GGPAGPKSLC NACGIRYRKR RASAVGMRKG  60
QERKRERSQN GGGSSSSTSS SDNELKESLK VNLMALGEEF WLLKKKQRSM CLLGEEEQAA  120
VCLMALSCGY VFA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.S7L1T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207532.12e-92GATA transcription factor 16
RefseqXP_025663075.12e-92GATA transcription factor 16
SwissprotQ9FJ102e-31GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A444YJP24e-91A0A444YJP2_ARAHY; Uncharacterized protein
STRINGAES823925e-44(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.16e-23GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]