PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.S6P3R

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 513aa MW: 58761.4 Da PI: 8.8373

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.S6P3R	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.6	4.1e-18	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k + w ++k++l+H+H+++p Araip.S6P3R 51 KFYRNYAKAAGFSTRVRSTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVSAWIISKVVLDHSHPCCP 137 6**************98887..8889*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-15	51	137	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.58	300	336	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MDDSTSDCQL NPGEVDYEFE SNEVPEPLSV VDDQLVPKVG MTFTTLEDAG KFYRNYAKAA 60 GFSTRVRSTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVS 120 AWIISKVVLD HSHPCCPSKA EMLKQHRKLS MSIRRTIENN EDADLYEDRH IWVPIYLDHH 180 FWAGMRSTQR SEIMHSFFNK FITRNSSLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC 240 ATKSSIEAQF QDAYTHQKFR EVQAQFRGKA NCITRLTNSA LGYSVYKVGE QVSSSIFNKF 300 VVTYDSVAAE VKCQCLFFES RGILCHHAIR MLSFEQVSQV SPRYILERWS KKVKRRHTHI 360 KSSHDEPLME PRSKRFDQLV FRSQNICEFA SESEELTAIL HRAYDNVMAE MESLKAKRNE 420 TSSLSHEDAN LESVNELQSP PRIRTRGRPK NRLGSKLEKQ IANATKKKKT KVLSEINLFD 480 AASVVHSNYS QYQGHVMNYQ FRVPAAGDNS LGV

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MDDSTSDCQL NPGEVDYEFE SNEVPEPLSV VDDQLVPKVG MTFTTLEDAG KFYRNYAKAA  60
GFSTRVRSTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVS  120
AWIISKVVLD HSHPCCPSKA EMLKQHRKLS MSIRRTIENN EDADLYEDRH IWVPIYLDHH  180
FWAGMRSTQR SEIMHSFFNK FITRNSSLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC  240
ATKSSIEAQF QDAYTHQKFR EVQAQFRGKA NCITRLTNSA LGYSVYKVGE QVSSSIFNKF  300
VVTYDSVAAE VKCQCLFFES RGILCHHAIR MLSFEQVSQV SPRYILERWS KKVKRRHTHI  360
KSSHDEPLME PRSKRFDQLV FRSQNICEFA SESEELTAIL HRAYDNVMAE MESLKAKRNE  420
TSSLSHEDAN LESVNELQSP PRIRTRGRPK NRLGSKLEKQ IANATKKKKT KVLSEINLFD  480
AASVVHSNYS QYQGHVMNYQ FRVPAAGDNS LGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.S6P3R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A1M9	0.0	A0A445A1M9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	6e-32	far-red elongated hypocotyls 3