PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.S69I6

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 344aa MW: 37395.7 Da PI: 6.973

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.S69I6	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00081	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Araip.S69I6 133 YECKTCNRTFPSFQALGGHRASH 155 99**********99999998887 PP
2	zf-C2H2	13	0.0003	240	262	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Araip.S69I6 240 HECSICGSEFTSGQALGGHMRRH 262 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.57E-8	132	155	No hit	No description
Pfam	PF13912	6.7E-13	133	157	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	133	155	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.305	133	160	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	135	155	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.57E-8	235	262	No hit	No description
Pfam	PF13912	2.8E-11	240	264	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.019	240	262	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.014	240	267	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	242	262	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MDYKEDYYLS NTSNDNCNVV HHDATHHIAK GKRTKRLRLL CGGATVIMPA SSCSSASGDD 60 HGSFSISSTT NQEEEDMANC LILLAQGGGD SHQKPPQVDD QDEDDDGCGN NKKKFSEIET 120 ATINNNKVGF YIYECKTCNR TFPSFQALGG HRASHKKPKL TTIPAAEDKK PPPPSPPPPL 180 PPPPPQQLMM KTNYDHHLHH SQQIETVPPN NNNPIISLQF GSGQKGNFHG NNNNKPNKIH 240 ECSICGSEFT SGQALGGHMR RHRATAAAAA NSTAQANVGL SRIEATSTVI TTTVEVQPRN 300 ILELDLNLPA PEEDLREPKF QFATAATKKS MVLSAAPALV DCHY

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MDYKEDYYLS NTSNDNCNVV HHDATHHIAK GKRTKRLRLL CGGATVIMPA SSCSSASGDD  60
HGSFSISSTT NQEEEDMANC LILLAQGGGD SHQKPPQVDD QDEDDDGCGN NKKKFSEIET  120
ATINNNKVGF YIYECKTCNR TFPSFQALGG HRASHKKPKL TTIPAAEDKK PPPPSPPPPL  180
PPPPPQQLMM KTNYDHHLHH SQQIETVPPN NNNPIISLQF GSGQKGNFHG NNNNKPNKIH  240
ECSICGSEFT SGQALGGHMR RHRATAAAAA NSTAQANVGL SRIEATSTVI TTTVEVQPRN  300
ILELDLNLPA PEEDLREPKF QFATAATKKS MVLSAAPALV DCHY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.S69I6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016187513.1	0.0	zinc finger protein ZAT5
Refseq	XP_025641675.1	0.0	zinc finger protein ZAT5
TrEMBL	A0A445E582	0.0	A0A445E582_ARAHY; Uncharacterized protein
STRING	GLYMA11G19830.1	6e-80	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-49	C2H2 family protein