PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.S1RHU
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 2055aa    MW: 232938 Da    PI: 6.2601
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.S1RHUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.82.4e-1113927611366
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL+ cA+avs++d++ a++lL+++++++ p gd+ qRla yf+ +L+ar+a++++++    ++ + ++ + ++ l+a+++f  ++P+ kf+h+  
  Araip.S1RHU 392 LRTLLVLCAQAVSANDQRTANELLKQIRQHSLPFGDAYQRLARYFADGLEARMAGTGPGIHIFYASLSYKKFSAADFLKAYQVFISACPFKKFAHFFS 489
                  5789****************************************************99998777777777777************************* PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N++Il+ +e++e++Hi+Df+i +G+QWp L++ La+R++gpp+lRiTg++ p++g   +e++ee g+rLak+++ ++vpfe+++++++++e++++e+L
  Araip.S1RHU 490 NKMILNIAEKAETLHIVDFGILYGFQWPILIKFLAKRDGGPPKLRITGIEYPQAGfrPTERIEESGRRLAKYCKLFNVPFEYKAIASRHWETIQIEDL 587
                  ******************************************************9*****************************9999********** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  ++k +E++aVn+ ++ ++ll+e+v+++s+r++vL+l+++++P ++ ++  + ++n++ Fl+rf eal +ysa++d++++ +pr++ +r+++Ere+lgr
  Araip.S1RHU 588 NIKDNEVVAVNCLVRFKNLLEETVEVNSPRNAVLNLIRRINPAIFAHTVVNGSYNAPFFLTRFREALFHYSAIYDMFDTLIPRNNAWRSMLEREFLGR 685
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrp 366
                  ei+nvvaceg er+er et+++W++r ++aGF+++pl++  +++ ++ l++ +   + +  +e+++++++gWk+r 
  Araip.S1RHU 686 EIMNVVACEGLERVERPETYKQWQARNSRAGFRQLPLDKALMSKFRSKLKEWYqhHKDFVFDEDNNWMLQGWKGRI 761
                  *************************************************998756677***************995 PP
2GRAS3312.3e-101103213963373
         GRAS    3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98  
                   +lL++cA+av++ d+++a  +L+++++++sp+gd +qR+a+yf+ +L++rl+  ++  y   pp +    + ++ l+a+kl++ +sP+  +++ +a
  Araip.S1RHU 1032 TLLTQCAQAVADYDKRNAYDTLKQIRQHSSPSGDGLQRMAHYFAIGLETRLNA-GTPSY---PPLDM--ASAADMLKAYKLYVTASPLQWMTNKLA 1121
                   69**************************************************9.33333...33333..34789********************** PP

         GRAS   99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 
                    q+I + v++e+rvHiiDf+is+G+QWp+L++ +++R +g+ +lRiTg++ p++g   +e++eetg+rL+ ++++ +vpfe+n  +a+++e++++e
  Araip.S1RHU 1122 TQTIKNLVQNESRVHIIDFGISYGFQWPCLIKYMSER-NGAIKLRITGIDLPQPGfrPTERVEETGRRLETLCKRYKVPFEYNC-IAQKWETIRVE 1215
                   ************************************9.6779************9*****************************.7********** PP

         GRAS  193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 
                   +L+++++E+++Vn+ ++l++l+de+vs++s+rd+vLkl+++++Pk++ +   + +++++ F +rf eal ++s+ f+++ea+ pre+ er+++E+ 
  Araip.S1RHU 1216 DLKIDRDEVTVVNCFYRLKNLPDETVSVNSPRDAVLKLMRRINPKIFLHGVVNGSYSAPFFPTRFREALFHFSSQFNMFEANCPREDAERMMLEKG 1311
                   ************************************************************************************************ PP

         GRAS  289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 
                   ++gr++ nv+acegaer+er e++++W+ r ++aGFk+++++++ ++++k ++++ + + + v+++ ++++ gWk+r   ++S+W
  Araip.S1RHU 1312 MIGRDAINVIACEGAERVERPESYKRWQIRNKRAGFKQIRVDQELVNEIKGMVKNEYHRDFVVDQDGNWVLHGWKGRIFHALSVW 1396
                   *********************************************************999************************* PP
3GRAS348.51.1e-106168820523373
         GRAS    3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98  
                   +lL++cA+av++ d+++a  +L+++++++sp+gd mqR+a+yf+ +L++rl+    ++ + lp   +s    ++ l+a+kl++ +sP+ ++++  a
  Araip.S1RHU 1688 SLLTQCAQAVANYDQRNAYDTLKQIRQHSSPAGDGMQRMAHYFAIGLETRLNA---GTPSYLPLDMAS---AADMLKAHKLYVTASPLQRMTNTFA 1777
                   79**************************************************9...455555666665...899********************** PP

         GRAS   99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 
                    q+I++ v++e++vHiiDf+i +G+QWp+L++ L++R + p +lRiTg++ p++g   +e+leetg+rL++++++ +vpfe+n  +a+++e+++le
  Araip.S1RHU 1778 TQTIMNLVQNESCVHIIDFGICYGFQWPCLIKRLSQR-NAPIKLRITGIDLPQPGfrPAERLEETGRRLENYCKRHNVPFEYNC-IAQKWETIRLE 1871
                   ************************************9.5668************9*****************************.7********** PP

         GRAS  193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 
                   +L+++++E+++Vn+ ++l++l+de+v ++s+rd+vLkl++s++P+++ +   + +++++ Fl+rf eal ++s+ fd++ea++pre+ er+ +E+ 
  Araip.S1RHU 1872 DLKIDRNEVTVVNCFYRLKNLPDETVLVNSPRDAVLKLIRSINPNIFLHGVVNGSYSAPFFLTRFREALFHFSSQFDMFEANVPREDVERMILEKG 1967
                   ************************************************************************************************ PP

         GRAS  289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 
                   l+gr++ nv+acegaer+er et+++W+ r ++aGFk+++++++ ++++k +l+k + + + v+++ +++++gWk+r L ++SaW
  Araip.S1RHU 1968 LIGRDAINVIACEGAERVERPETYKQWQIRNKRAGFKQIRVDQELVNEIKGMLKKEYHRDFVVDQDGKWVLQGWKGRILHALSAW 2052
                   *********************************************************999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.847366747IPR005202Transcription factor GRAS
PfamPF035148.3E-109392761IPR005202Transcription factor GRAS
PROSITE profilePS5098558.87210041377IPR005202Transcription factor GRAS
PfamPF035148.0E-9910321396IPR005202Transcription factor GRAS
PROSITE profilePS5098561.00816602033IPR005202Transcription factor GRAS
PfamPF035143.7E-10416882052IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 2055 aa     Download sequence    Send to blast
MDPNRVRNTD YINAYGFGDY GGALLSDFND WDLHRQYNHP FDLTPSNAFD RFDADTFGLH  60
AHAVSNSGSS EPFVPPSSAS RVEKSMPGSA FGAVASMPDP SVEDTDFSET VRYISQILLE  120
ENFEDKPCMC YNPLSLQDTE KSFYDALNQE FPLSPNEHPL DIHQNLESPD GVSAGSFPTG  180
SSGDPFSRYS CFRIGDGVFD LDPSATKLLA QNIFSNADSI LQFKRGLEEA SKFLPPGPRL  240
STGLESSSMH AEESKRRVEK AAVPVMVEND AKERSNRVVA GPYHIVPATT KAAKNTAARS  300
LDGVKSRKHH ARQGDDGEEE RCNKQSAVSV EEENEISEMF DKVLLSVENV PLSAEQQGGL  360
VVDTQLIEQP HSSEGGRSRS KKKGRKKETV DLRTLLVLCA QAVSANDQRT ANELLKQIRQ  420
HSLPFGDAYQ RLARYFADGL EARMAGTGPG IHIFYASLSY KKFSAADFLK AYQVFISACP  480
FKKFAHFFSN KMILNIAEKA ETLHIVDFGI LYGFQWPILI KFLAKRDGGP PKLRITGIEY  540
PQAGFRPTER IEESGRRLAK YCKLFNVPFE YKAIASRHWE TIQIEDLNIK DNEVVAVNCL  600
VRFKNLLEET VEVNSPRNAV LNLIRRINPA IFAHTVVNGS YNAPFFLTRF REALFHYSAI  660
YDMFDTLIPR NNAWRSMLER EFLGREIMNV VACEGLERVE RPETYKQWQA RNSRAGFRQL  720
PLDKALMSKF RSKLKEWYQH HKDFVFDEDN NWMLQGWKGR IFLRFNMLST NPYLENFPGH  780
LQPIMNGFHS SSSSSSGTIS SGDSTESSKY SNNILRYISD ILMDEEDDLE NKPCMLQQCL  840
RLQAAEKSFS EVLGNSSNSP PSQGCDESNQ DGDYCRSTSF ESYSSFNTDN SSYEFDWVNL  900
VGEYESSLLQ ASLLGGSYGT HYQNMVPLIN NEEGSSPGTR EKRSYQVDDD ASYEQGRRGN  960
KISATVFSDE SEPPEILYEV LRIPYGRSKK YCCVEPLSKN DMLKMQNVGS NSKTGRSKNR  1020
NSNTDATVDL WTLLTQCAQA VADYDKRNAY DTLKQIRQHS SPSGDGLQRM AHYFAIGLET  1080
RLNAGTPSYP PLDMASAADM LKAYKLYVTA SPLQWMTNKL ATQTIKNLVQ NESRVHIIDF  1140
GISYGFQWPC LIKYMSERNG AIKLRITGID LPQPGFRPTE RVEETGRRLE TLCKRYKVPF  1200
EYNCIAQKWE TIRVEDLKID RDEVTVVNCF YRLKNLPDET VSVNSPRDAV LKLMRRINPK  1260
IFLHGVVNGS YSAPFFPTRF REALFHFSSQ FNMFEANCPR EDAERMMLEK GMIGRDAINV  1320
IACEGAERVE RPESYKRWQI RNKRAGFKQI RVDQELVNEI KGMVKNEYHR DFVVDQDGNW  1380
VLHGWKGRIF HALSVWNMKM ASGGGGYGTA SMKEPIMNGF HCESSSYSPG TSSSEDSAEY  1440
NKYSNPILRY ISDILMEEED DLENKPCMLQ QCLKLQAAEK SFSEVLGNSS NSVPSQGCDE  1500
NNRDGDYGRT TSFESYSSCT TDNNSYESDW VNLVGEYESS LLQAPDNDSY ESDWLNLLDS  1560
PNDGSSEIHY QNMVLLTNNE EGSRSGTTGT REKRSIQVDD DTSYEQGRRG SKISAVFSDE  1620
SEPPEILDEV LRVQIGRSQC LSGVEPLPEN EMLKRQNVDS VGSSGKTARS KKGSSRNSNT  1680
GATVDLWSLL TQCAQAVANY DQRNAYDTLK QIRQHSSPAG DGMQRMAHYF AIGLETRLNA  1740
GTPSYLPLDM ASAADMLKAH KLYVTASPLQ RMTNTFATQT IMNLVQNESC VHIIDFGICY  1800
GFQWPCLIKR LSQRNAPIKL RITGIDLPQP GFRPAERLEE TGRRLENYCK RHNVPFEYNC  1860
IAQKWETIRL EDLKIDRNEV TVVNCFYRLK NLPDETVLVN SPRDAVLKLI RSINPNIFLH  1920
GVVNGSYSAP FFLTRFREAL FHFSSQFDMF EANVPREDVE RMILEKGLIG RDAINVIACE  1980
GAERVERPET YKQWQIRNKR AGFKQIRVDQ ELVNEIKGML KKEYHRDFVV DQDGKWVLQG  2040
WKGRILHALS AWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-4837520541379Protein SCARECROW
5b3h_D8e-4837520541379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.S1RHU
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016169454.10.0LOW QUALITY PROTEIN: uncharacterized protein LOC107612146
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A444Y8F70.0A0A444Y8F7_ARAHY; Uncharacterized protein
STRINGAES676280.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]