PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.S1QXI
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 291aa    MW: 33364 Da    PI: 6.5567
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.S1QXIgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.48.5e-07224286172
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek 72 
                  +fY++++k  GF vrk  s+k            + + eg re ++ +  +++r +++etrt+Cka+l v+k +
  Araip.S1QXI 224 EFYRRFGKLHGFGVRKGDSEKD----------CKGNSEGLRECKHYDrVVRTRIHKPETRTNCKAMLSVRKLS 286
                  6****************99887..........34478888888877756778889**************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF815581.09E-2240138IPR001280Photosystem I PsaA/PsaB
PfamPF002231.6E-2674137IPR001280Photosystem I PsaA/PsaB
Gene3DG3DSA:1.20.1130.102.9E-2274137IPR001280Photosystem I PsaA/PsaB
PfamPF031011.2E-4224286IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015979Biological Processphotosynthesis
GO:0009522Cellular Componentphotosystem I
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MSVGMVSMMS FMRGSWCVRD SYYHFPCRCR IHCAITIVTI NPLPRELLLM ELYFFRDYNS  60
EQNEDNVLAR TLFLGFHPQT QSLWLTDIAH HHLAIAILFL IAGHMYRTNF GIGHNIKEIL  120
KAHIPLGGRL GHGHKGETFL DLLESWYPEG EVKIFIERIT NEMEVTLSEG DADCRGSECD  180
AYEELNHREF SGSVADDECC ELEDLGGLSG DDILKKVSID NAYEFYRRFG KLHGFGVRKG  240
DSEKDCKGNS EGLRECKHYD RVVRTRIHKP ETRTNCKAML SVRKLSNTTM S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5l8r_B4e-3071136256321Photosystem I P700 chlorophyll a apoprotein A2
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.S1QXI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4680942e-84KJ468094.1 Arachis hypogaea chloroplast, complete genome.
GenBankKX2574872e-84KX257487.1 Arachis hypogaea chloroplast, complete genome.