PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.S159U

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

TALE

Protein Properties

Length: 643aa MW: 71399 Da PI: 6.2562

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.S159U	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.8	2.2e-09	393	430	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +qV +WF N R + Araip.S159U 393 FEHflHPYPKDSEKIMLARQTGLTRNQVANWFINARVR 430 665559******************************88 PP
2	BELL	124.4	4.5e-40	264	335	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rq+l kk+kLl +l+eVdkrY+qy++q+q+v+ssF++vag+g+a+pYt+lAl++iSrhFrcL+dai++qi Araip.S159U 264 DRQNLLDKKTKLLAMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQI 335 5788999****************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.1E-58	182	333	IPR006563	POX domain
Pfam	PF07526	1.2E-50	190	332	IPR006563	POX domain
PROSITE profile	PS50071	12.438	371	434	IPR001356	Homeobox domain
SMART	SM00389	1.6E-9	374	438	IPR001356	Homeobox domain
CDD	cd00086	1.86E-12	374	435	No hit	No description
SuperFamily	SSF46689	2.31E-17	375	441	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-28	377	440	IPR009057	Homeodomain-like
Pfam	PF05920	3.1E-17	391	430	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence Send to blast
MYQNQAFPSG SYEEMLSGNS LLTHHNYGDS VGGGGHNNEL KFITSLGESM TMQPLEEHSN 60 AAATGDPSCN SFGDQNIQCQ GLSLSLGSVM PSIATSMPHH FQYPQYHNSS FTSLMNAMPN 120 LKGNNGSSLK DDEVRNTECM TPPMSSGGFY NSIKREGLYN NTNHPSMCLS EGQVDPGLHG 180 SAGFSSSTAL NSQYLKAAQE LLDEIVNVRK ALKQPGLEKQ QSFRDAGLDG SKDSDGKSNS 240 QSMQVSSGAN GSAVNSSTEL SPADRQNLLD KKTKLLAMLD EVDKRYRQYC HQMQIVVSSF 300 DMVAGCGAAE PYTALALRTI SRHFRCLRDA ISGQIQVTQR SLGEQEGIPR LRYVDQQLRQ 360 QKALQQLGVM RQAWRPQRGL PESSVSILRA WLFEHFLHPY PKDSEKIMLA RQTGLTRNQV 420 ANWFINARVR LWKPMVEEMY KEEFGDSEMS CNLLSENSIP KASRDDVQVS DNNKREESQE 480 NLAAVDDSVQ HGIQSSDYGE NLMDSSSSRT SRKLQQCDQR FNMKNTPFSN ASTIQINHHN 540 GHDDGNGCLA STHATYDYSA LGNFAAVGGH VSLALELRNR ESNGLGMSND DEIHNKRSSN 600 QTLASSSEND LLDYHLTEQE KQQQQQQHKF GNPQQRLLHE FVV

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence Send to blast

MYQNQAFPSG SYEEMLSGNS LLTHHNYGDS VGGGGHNNEL KFITSLGESM TMQPLEEHSN  60
AAATGDPSCN SFGDQNIQCQ GLSLSLGSVM PSIATSMPHH FQYPQYHNSS FTSLMNAMPN  120
LKGNNGSSLK DDEVRNTECM TPPMSSGGFY NSIKREGLYN NTNHPSMCLS EGQVDPGLHG  180
SAGFSSSTAL NSQYLKAAQE LLDEIVNVRK ALKQPGLEKQ QSFRDAGLDG SKDSDGKSNS  240
QSMQVSSGAN GSAVNSSTEL SPADRQNLLD KKTKLLAMLD EVDKRYRQYC HQMQIVVSSF  300
DMVAGCGAAE PYTALALRTI SRHFRCLRDA ISGQIQVTQR SLGEQEGIPR LRYVDQQLRQ  360
QKALQQLGVM RQAWRPQRGL PESSVSILRA WLFEHFLHPY PKDSEKIMLA RQTGLTRNQV  420
ANWFINARVR LWKPMVEEMY KEEFGDSEMS CNLLSENSIP KASRDDVQVS DNNKREESQE  480
NLAAVDDSVQ HGIQSSDYGE NLMDSSSSRT SRKLQQCDQR FNMKNTPFSN ASTIQINHHN  540
GHDDGNGCLA STHATYDYSA LGNFAAVGGH VSLALELRNR ESNGLGMSND DEIHNKRSSN  600
QTLASSSEND LLDYHLTEQE KQQQQQQHKF GNPQQRLLHE FVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	3e-16	380	437	1	58	Homeobox protein Meis1
4xrs_B	3e-16	380	437	1	58	Homeobox protein Meis1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269\|PubMed:16513846}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.S159U

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT136990	5e-96	BT136990.1 Lotus japonicus clone JCVI-FLLj-16H21 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016204753.1	0.0	BEL1-like homeodomain protein 7 isoform X1
Refseq	XP_016204754.1	0.0	BEL1-like homeodomain protein 7 isoform X1
Refseq	XP_016204755.1	0.0	BEL1-like homeodomain protein 7 isoform X1
Refseq	XP_025657750.1	0.0	BEL1-like homeodomain protein 7
Swissprot	Q9FWS9	1e-111	BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBL	A0A445CK32	0.0	A0A445CK32_ARAHY; Uncharacterized protein
STRING	XP_007160715.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2146	31	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	1e-103	BEL1-like homeodomain 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]