PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.RYZ75

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Dof

Protein Properties

Length: 453aa MW: 49148.9 Da PI: 7.9004

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.RYZ75	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.7	2.9e-39	100	160	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCyynny+++qPryfCkaC+ryWt+GG++rnvPvG+grrknk+s Araip.RYZ75 100 PDKLLPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 160 78999*****************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.5E-32	102	158	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.686	104	158	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	106	142	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-24	106	157	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MEDQSTVTIR DPAIKLFGQK IPLPGDPDDA EAENLTTQEQ EADPPPNVEE NKKSATSPEA 60 MVNPKTPAIE EDSAKSKSDK SDKEQGDTSS PQDQKPLKKP DKLLPCPRCN SMDTKFCYYN 120 NYNVNQPRYF CKACQRYWTA GGTMRNVPVG AGRRKNKNSA NHYRHITISE ALQAARIDAP 180 NGTHLPALKS NGRVLSFGID APICDSMASV LNLGEKKVLN GTRNGFHHGF DDQRLKVPSK 240 SGENGEACTS SSPVAVSNPM GENSKSTFQE PMLPSNGYLP QVPCIASVPW PYPWNAAIPS 300 PAMCPPGFPA LPFYPAAFWN CSMPGNWNVP WFPPQSSPSN PKSPSSGPNS PTLGKHSRDG 360 DTGNQDSLSK EEPPKQRNGS VLVPKTLRID DPSEAAKSSI WATLGIKNES ISGGGMFKAF 420 QSTKEEKNQV EASPVLRANP AALSRSLNFH ESS

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MEDQSTVTIR DPAIKLFGQK IPLPGDPDDA EAENLTTQEQ EADPPPNVEE NKKSATSPEA  60
MVNPKTPAIE EDSAKSKSDK SDKEQGDTSS PQDQKPLKKP DKLLPCPRCN SMDTKFCYYN  120
NYNVNQPRYF CKACQRYWTA GGTMRNVPVG AGRRKNKNSA NHYRHITISE ALQAARIDAP  180
NGTHLPALKS NGRVLSFGID APICDSMASV LNLGEKKVLN GTRNGFHHGF DDQRLKVPSK  240
SGENGEACTS SSPVAVSNPM GENSKSTFQE PMLPSNGYLP QVPCIASVPW PYPWNAAIPS  300
PAMCPPGFPA LPFYPAAFWN CSMPGNWNVP WFPPQSSPSN PKSPSSGPNS PTLGKHSRDG  360
DTGNQDSLSK EEPPKQRNGS VLVPKTLRID DPSEAAKSSI WATLGIKNES ISGGGMFKAF  420
QSTKEEKNQV EASPVLRANP AALSRSLNFH ESS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.RYZ75

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016192216.1	0.0	cyclic dof factor 3
Refseq	XP_025629348.1	0.0	cyclic dof factor 3
Swissprot	Q8LFV3	1e-125	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A445AZQ2	0.0	A0A445AZQ2_ARAHY; Uncharacterized protein
STRING	GLYMA17G10920.3	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-108	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]